These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4355#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 282 fasta sequence [GATCAGCATGTGAAGCGATAGCACTTAGTCTTTCAATTTCAAGGTTCAGTTTTTCAACGACGTGCACACATGCTCCTATATTTTCACTCTAACGGTTTCNCTTTAAACGCCACTCNGCCATTTGTTACCGCAACTGGTTTCCCAAGAAATTTTCAGGGTGGATGCTCTGAGACACAGCCAAGACATTAAGGTCTACGTCTTAATACTTGAGGAAGCAGTTTCCTTATACTCTTTTGAAGGATTAGGACTCTGATCTTTCTGGCTTTTAGACCGCAGAGCACC] [+] EMBL CD187144 [GATCAGCATGTGAAGCGATAGCACTTAGTCTTTCAATTTCAAGGTTCAGTTTTTCAACGACGTGCACACATGCTCCTATATTTTCACTCTAACGGTTTCNCTTTAAACGCCACTCNGCCATTTGTTACCGCAACTGGTTTCCCAAGAAATTTTCAGGGTGGATGCTCTGAGACACAGCCAAGACATTAAGGTCTACGTCTTAATACTTGAGGAAGCAGTTTCCTTATACTCTTTTGAAGGATTAGGACTCTGATCTTTCTGGCTTTTAGACCGCAGAGCACC] consensusID : consensus_4355#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 266 fasta sequence [GATCAGCATGTGAAGCGATAGCACTTAGTCTTTCAATTTCAAGGTTCAGTTTTTCAACGAGTGCACACAGCTCCATATTTTCATCTAAGGTTTCCTTTAAAGCCACTCGCCTTTGTTCTGCAATGGTTTCCCAATAATTTTCAGGTGGATGCTCTGAGCACAGCCAAGCATTAAGGTCTACGTCTTCTACTTGGGAAGCAGTTTCCTTATACTCTTTTGAAGGATTAGGACTCTGATCTTTCTGGCTTTTAGACCGCAGAGCACCA] [+] EMBL CD132353 [GATCAGCATGTGAAGCGATAGCACTTAGTCTTTCAATTTCAAGGTTCAGTTTTTCAACGAGTGCACACAGCTCCATATTTTCATCTAAGGTTTCCTTTAAAGCCACTCGCCTTTGTTCTGCAATGGTTTCCCAATAATTTTCAGGTGGATGCTCTGAGCACAGCCAAGCATTAAGGTCTACGTCTTCTACTTGGGAAGCAGTTTCCTTATACTCTTTTGAAGGATTAGGACTCTGATCTTTCTGGCTTTTAGACCGCAGAGCACC ] [-] EMBL CD132300 [ ATCAGCATGTGAAGCGATAGCACTTAGTCTTTCAATTTCAAGGTTCAGTTTTTCAACGAGTGCCCACAGCTCCATATTTTCATCTAAGGTTTCCTTTAAAGCCACTCGCCTTTGTTCCGCAATGGTTTCCCAATAATTTTCAGGTGGATGCTCTGAGCACAGCCAAGCATTAAGGTCTACGTCTTCTACTTGGGAAGCAGTTCCCTTATACTCTTTTGAAGGATTAGGACTCTGATCTTTCTGGCTTTTAGACCGCAGAGCACCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4355#0 GATCAGCATGTGAAGCGATAGCACTTAGTCTTTCAATTTCAAGGTTCAGTTTTTCAACGA 60 consensus_4355#1 GATCAGCATGTGAAGCGATAGCACTTAGTCTTTCAATTTCAAGGTTCAGTTTTTCAACGA 60 ************************************************************ consensus_4355#0 CGTGCACACATGCTCCTATATTTTCACTCTAACGGTTTCNCTTTAAACGCCACTCNGCCA 120 consensus_4355#1 -GTGCACACA-GCTCC-ATATTTTCA-TCTAA-GGTTTCCTTT--AAAGCCACTCGCC-- 111 ********* ***** ********* ***** ****** ** ** ******* * consensus_4355#0 TTTGTTACCGCAACTGGTTTCCCAAGAAATTTTCAGGGTGGATGCTCTGAGACACAGCCA 180 consensus_4355#1 TTTGTT-CTGCAA-TGGTTTCCCAATAA-TTTTCAGG-TGGATGCTCTGAG-CACAGCCA 166 ****** * **** *********** ** ******** ************* ******** consensus_4355#0 AGACATTAAGGTCTACGTCTTAATACTTGAGGAAGCAGTTTCCTTATACTCTTTTGAAGG 240 consensus_4355#1 AG-CATTAAGGTCTACGTCTTC-TACTTG-GGAAGCAGTTTCCTTATACTCTTTTGAAGG 223 ** ****************** ****** ****************************** consensus_4355#0 ATTAGGACTCTGATCTTTCTGGCTTTTAGACCGCAGAGCACC- 282 consensus_4355#1 ATTAGGACTCTGATCTTTCTGGCTTTTAGACCGCAGAGCACCA 266 ****************************************** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||