cluster # 4358

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Schistosoma mansoni
cluster # 4358 cluster # 4358 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4358#0 length = 565 sequences # 1

consensus_4358#1 length = 343 sequences # 2

consensusID : consensus_4358#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 565
fasta sequence

                              [NNNNNNNNNNNNNNNACTTTAAGTCATACCTCTGTGTGTAACTTGAACATGAACATGAATTCTTATTATGGTTACTGTGATTTTTTATTTTAACTTTGATATATGTATTTTTGGTCTCCTTCACCTTATCACCAGTCGTTTTTGCCTCTTTTCACCACAGTCTAATACAGGNNNNNNNNCACTGATTTCAAAATAAACATGTAGCCAGTTTGCCGAACGAAATTATGTTACATTGCGGTTCTTTCTAGTAGGAGCATTTTGATTTAAGTTTAATAATTGTCCGTACTTATTAATAAAACATTTGCTTTGAAAATTCTTCGGACTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAAGTTAGAATCTTGCGTTTTCGACTAGTGAGGTGGCAACAGGTAATTTCTGATCAATTGGTTTCAGTTAACACTCATGATTTGAGGATGTAGGTCACCAACCAGTAAATAAAGTTTTGTTTAACAGTAGAGCGTTTACAGATTGCATAGCTATGATATACGTACTATCCTTGTTTCCTTTCACAATGGAACAGAAGAACTCTTGTATAA]

[+] EMBL CD080952             [NNNNNNNNNNNNNNNACTTTAAGTCATACCTCTGTGTGTAACTTGAACATGAACATGAATTCTTATTATGGTTACTGTGATTTTTTATTTTAACTTTGATATATGTATTTTTGGTCTCCTTCACCTTATCACCAGTCGTTTTTGCCTCTTTTCACCACAGTCTAATACAGGNNNNNNNNCACTGATTTCAAAATAAACATGTAGCCAGTTTGCCGAACGAAATTATGTTACATTGCGGTTCTTTCTAGTAGGAGCATTTTGATTTAAGTTTAATAATTGTCCGTACTTATTAATAAAACATTTGCTTTGAAAATTCTTCGGACTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAAGTTAGAATCTTGCGTTTTCGACTAGTGAGGTGGCAACAGGTAATTTCTGATCAATTGGTTTCAGTTAACACTCATGATTTGAGGATGTAGGTCACCAACCAGTAAATAAAGTTTTGTTTAACAGTAGAGCGTTTACAGATTGCATAGCTATGATATACGTACTATCCTTGTTTCCTTTCACAATGGAACAGAAGAACTCTTGTATAA]




>consensus_4358#0
NNNNNNNNNNNNNNNACTTTAAGTCATACCTCTGTGTGTAACTTGAACATGAACATGAAT
TCTTATTATGGTTACTGTGATTTTTTATTTTAACTTTGATATATGTATTTTTGGTCTCCT
TCACCTTATCACCAGTCGTTTTTGCCTCTTTTCACCACAGTCTAATACAGGNNNNNNNNC
ACTGATTTCAAAATAAACATGTAGCCAGTTTGCCGAACGAAATTATGTTACATTGCGGTT
CTTTCTAGTAGGAGCATTTTGATTTAAGTTTAATAATTGTCCGTACTTATTAATAAAACA
TTTGCTTTGAAAATTCTTCGGACTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAAGT
TAGAATCTTGCGTTTTCGACTAGTGAGGTGGCAACAGGTAATTTCTGATCAATTGGTTTC
AGTTAACACTCATGATTTGAGGATGTAGGTCACCAACCAGTAAATAAAGTTTTGTTTAAC
AGTAGAGCGTTTACAGATTGCATAGCTATGATATACGTACTATCCTTGTTTCCTTTCACA
ATGGAACAGAAGAACTCTTGTATAA

consensusID : consensus_4358#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 343
fasta sequence

                              [ACCAGTCGTTTTTGCCTCTTTTCACCACAGTCTAATACAGGCTGAAATCCACTGATTTCAAAATAAACATGTAGCCAGTTTGCCGAACGAAATTATGTTACATTGCGGTTCTTTCTAGTAGGAGCATTTTGATTTAAGTTTAATAATTGTCCGTACTTATTAATAAAACATTTGCTTTGAAAATTCTTCGGACTACGATCCTAATGACTAGTAAATGTTTAAAATCAAAGTTAGAATCTTGCGTTTTCGACTAGTGAGGTGGCAACAGGTAATTTCTGATCAATTGGTTTCAGTTAACACTCATGATTTGAGGATGTAGGTCACCAACCAGTAAATAAAGTTT]

[+] EMBL CD156323             [ACCAGTCGTTTTTGCCTCTTTTCACCACAGTCTAATACAGGCTGAAATCCACTGATTTCAAAATAAACATGTAGCCAGTTTGCCGAACGAAATTATGTTACATTGCGGTTCTTTCTAGTAGGAGCATTTTGATTTAAGTTTAATAATTGTCCGTACTTATTAATAAAACATTTGCTTTGAAAATTCTTCGGACTACGATCCTAATGACTAGTAAATGTTTAAAATCAAAGTTAGAATCTTGCGTTTTCGACTAGTGAGGTGGCAACAGGTAATTTCTGATCAATTGGTTTCAGTTAACACTCATGATTTGAGGATGTAGGTCACCAACCAGTAAATAAAGTT ]
[-] EMBL CD156500             [ CCAGTCGTTTTTGCCTCTTTTCACCACAGTCTAATACAGGCTGAAATCCACTGATTTCAAAATAAACATGTAGCCAGTTTGCCGAACGAAATTATGTTACATTGCGGTTCTTTCTAGTAGGAGCATTTTGATTTAAGTTTAATAATTGTCCGTACTTATTAATAAAACATTTGCTTTGAAAATTCTTCGGACTACGATCTTAATGACTAGTAAATGTTTAAAATCAAAGTTAGAATCTTGCGTTTTCGACTAGTGAGGTGGCAACAGGTAATTTCTGATCAATTGGTTTCAGTTAACACTCATGATTTGAGGATGTAGGTCACCAACCAGTAAATAAAGTTT]




>consensus_4358#1
ACCAGTCGTTTTTGCCTCTTTTCACCACAGTCTAATACAGGCTGAAATCCACTGATTTCA
AAATAAACATGTAGCCAGTTTGCCGAACGAAATTATGTTACATTGCGGTTCTTTCTAGTA
GGAGCATTTTGATTTAAGTTTAATAATTGTCCGTACTTATTAATAAAACATTTGCTTTGA
AAATTCTTCGGACTACGATCCTAATGACTAGTAAATGTTTAAAATCAAAGTTAGAATCTT
GCGTTTTCGACTAGTGAGGTGGCAACAGGTAATTTCTGATCAATTGGTTTCAGTTAACAC
TCATGATTTGAGGATGTAGGTCACCAACCAGTAAATAAAGTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4358#0      NNNNNNNNNNNNNNNACTTTAAGTCATACCTCTGTGTGTAACTTGAACATGAACATGAAT 60
consensus_4358#1      ------------------------------------------------------------
                                                                                  

consensus_4358#0      TCTTATTATGGTTACTGTGATTTTTTATTTTAACTTTGATATATGTATTTTTGGTCTCCT 120
consensus_4358#1      ------------------------------------------------------------
                                                                                  

consensus_4358#0      TCACCTTATCACCAGTCGTTTTTGCCTCTTTTCACCACAGTCTAATACAGGNNNNNNNNC 180
consensus_4358#1      ----------ACCAGTCGTTTTTGCCTCTTTTCACCACAGTCTAATACAGGCTGAAATCC 50
                                *****************************************        *

consensus_4358#0      ACTGATTTCAAAATAAACATGTAGCCAGTTTGCCGAACGAAATTATGTTACATTGCGGTT 240
consensus_4358#1      ACTGATTTCAAAATAAACATGTAGCCAGTTTGCCGAACGAAATTATGTTACATTGCGGTT 110
                      ************************************************************

consensus_4358#0      CTTTCTAGTAGGAGCATTTTGATTTAAGTTTAATAATTGTCCGTACTTATTAATAAAACA 300
consensus_4358#1      CTTTCTAGTAGGAGCATTTTGATTTAAGTTTAATAATTGTCCGTACTTATTAATAAAACA 170
                      ************************************************************

consensus_4358#0      TTTGCTTTGAAAATTCTTCGGACTANNNNNNNNNNNNNNNNNNNNNNNNNNNNN-CAAAG 359
consensus_4358#1      TTTGCTTTGAAAATTCTTCGGACTACGATCCTAATGACTAGTAAATGTTTAAAATCAAAG 230
                      *************************                              *****

consensus_4358#0      TTAGAATCTTGCGTTTTCGACTAGTGAGGTGGCAACAGGTAATTTCTGATCAATTGGTTT 419
consensus_4358#1      TTAGAATCTTGCGTTTTCGACTAGTGAGGTGGCAACAGGTAATTTCTGATCAATTGGTTT 290
                      ************************************************************

consensus_4358#0      CAGTTAACACTCATGATTTGAGGATGTAGGTCACCAACCAGTAAATAAAGTTTTGTTTAA 479
consensus_4358#1      CAGTTAACACTCATGATTTGAGGATGTAGGTCACCAACCAGTAAATAAAGTTT------- 343
                      *****************************************************       

consensus_4358#0      CAGTAGAGCGTTTACAGATTGCATAGCTATGATATACGTACTATCCTTGTTTCCTTTCAC 539
consensus_4358#1      ------------------------------------------------------------
                                                                                  

consensus_4358#0      AATGGAACAGAAGAACTCTTGTATAA 565
consensus_4358#1      --------------------------