These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_436#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 355 fasta sequence [CAATTGCCGCAGCTGTCGGCTCGTTAATGATTCTCAACACATTAAGACCAGCTATAGCACCTGCATCTTTCGTTGCTTGACGTTGACTGTCATTGAAGTAAGCAGGAACCGTTATAACAGCGTCACTCACCGTCCTGCCCAAATAACTTTCAGCAACCTCCTTCATCTTCGTCAACACCATTGACGAAATCTCCCCAGCGGAAAACATCTTTTTCTCACCCTTATACTCAACACAAATCTTCAGCTTCCCACCGACTTGAGTCACCTCGATTATCAATTGAACCTGTCCTTGGTGTTAAATTGAGCTTGTCACGATCTGCAAAGTTAGGTTCTGCTGTGTCGTAAAACAATGACT] [+] EMBL CD196205 [CAATTGCCGCAGCTGTCGGCTCGTTAATGATTCTCAACACATTAAGACCAGCTATAGCACCTGCATCTTTCGTTGCTTGACGTTGACTGTCATTGAAGTAAGCAGGAACCGTTATAACAGCGTCACTCACCGTCCTGCCCAAATAACTTTCAGCAACCTCCTTCATCTTCGTCAACACCATTGACGAAATCTCCCCAGCGGAAAACATCTTTTTCTCACCCTTATACTCAACACAAATCTTCAGCTTCCCACCGACTTGAGTCACCTCGATTATCAATTGAACCTGTCCTTGGTGTTAAATTGAGCTTGTCACGATCTGCAAAGTTAGGTTCTGCTGTGTCGTAAAACAATGACT] consensusID : consensus_436#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 245 fasta sequence [CTCACGGAATTCACGTTTCCGCGGGCGGGATAGCCGAGATCGTGGTCGTGACATGCCGCGTGGACGACGAGATGATTTTCGAATCTCTCCGAACCGCCGAAATGATGATCGTGGTCGCCGTGACTACAGGTAAAAATTGATGTGGTTAGGAGTAAACGTGATGTAATTTAGTGATTCCAGGCTTCTCAACAACTTTTCTTTATATTTCAGAGGCGGTTACAATGCTTCACGTGATCGTAGTCGAG] [+] EMBL CD067445 [CTCACGGAATTCACGTTTCCGCGGGCGGGATAGCCGAGATCGTGGTCGTGACATGCCGCGTGGACGACGAGATGATTTTCGAATCTCTCCGAACCGCCGAAATGATGATCGTGGTCGCCGTGACTACAGGTAAAAATTGATGTGGTTAGGAGTAAACGTGATGTAATTTAGTGATTCCAGGCTTCTCAACAACTTTTCTTTATATTTCAGAGGCGGTTACAATGCTTCACGTGATCGTAGTCGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_436#0 CAATTGCCGCAGCTGTCGGCTCGTTAATGATTCTCAACACATTAAGACCAGCTATAGCAC 60 consensus_436#1 ------------------------------------------------------------ consensus_436#0 CTGCATCTTTCGTTGCTTGACGTTGACTGTCATTGAAGTAAGCAGGAACCGTTATAACAG 120 consensus_436#1 ------CTCACGG-AATTCACGTTT-CCGCGGGCGGGATA-GCCGAGATCGTGGTCGTGA 51 ** ** ** ***** * * * ** ** * * *** * consensus_436#0 CGTCACTCACCGTCCTGCCCAAATAACTTTCAGCAACCTCCTTCATCTTCGTCAACACCA 180 consensus_436#1 CATGCCGCGTGGAC--GACGAGATGATTTTCG--AATCTCTCCGAAC--CGCCGAAATGA 105 * * * * * * * * * ** * **** ** *** * * ** * * * * consensus_436#0 TTGACGAAATCTCCCCAGCGGAAAACATCTTTTTCTCACCCTTATACTCAACACAAATCT 240 consensus_436#1 TGATCGTGGTCGCCGTGACTACAGGTAAAAATTGATGTGGTTAGGAGTAAACGTGA---T 162 * ** ** ** * * * ** * * * * *** * * consensus_436#0 TCAGCTTCCCACCGACTTGAGTCACCTCGATTATCAATTGAACCTGTCCTTGGTGTTAAA 300 consensus_436#1 GTAATTT---AGTGATTCCAGGCTTCTCAAC---------AACTTTTCTTTATATTTCAG 210 * ** * ** * ** * *** * *** * ** ** ** * consensus_436#0 TTGAGCTTGTCACGATCTGCAAAGTTAGGTTCTGCTGTGTCGTAAAACAATGACT 355 consensus_436#1 AGGCGGTTACAATGCTTCACGTGATCGTAGTCGAG-------------------- 245 * * ** * * * * * ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||