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Schistosoma mansoni
cluster # 4367 cluster # 4367       Sequences # 3       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4367#0 length = 643 sequences # 1  
consensus_4367#1 length = 467 sequences # 1  
consensus_4367#2 length = 465 sequences # 1  

consensusID : consensus_4367#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 643
fasta sequence
                              [TCGNNGCACGAGGAATCTGACAGGGNAAGACTATAACATTGGAGGTGGAGCCTAGTGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAATGCAAATATTTGTGAAGACATTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAGTGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAATGCAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACATTGGAGGTGGAGCCTAGTGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACNACATCCAGAAGGA]

[+] EMBL CD081908             [TCGNNGCACGAGGAATCTGACAGGGNAAGACTATAACATTGGAGGTGGAGCCTAGTGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAATGCAAATATTTGTGAAGACATTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAGTGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAATGCAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACATTGGAGGTGGAGCCTAGTGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACNACATCCAGAAGGA]


>consensus_4367#0 TCGNNGCACGAGGAATCTGACAGGGNAAGACTATAACATTGGAGGTGGAGCCTAGTGATA CTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAAC GTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCC AGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAATGCAAATATTTGTGA AGACATTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAGTGATACTATTGAGAATG TGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATCTTCG CTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAAGAGTCGA CTCTGCATCTTGTCCTTCGTCTACGTGGTGGAATGCAAATATTTGTGAAGACGTTGACTG GTAAGACGATCACATTGGAGGTGGAGCCTAGTGATACTATTGAGAATGTGAAAGCGAAGA TCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATCTTCGCTGGTAAGCAGT TGGAAGATGGACGTACTCTGTCTGACTACNACATCCAGAAGGA



consensusID : consensus_4367#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 467
fasta sequence
                              [TAAGTTGACGTCTCCGTGTCTCATGAGGCCGACGTCCCATTGTGGATCCTAGTGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAATGCAAATATTTGTGAAGACATTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAGTGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAATGCANATATTTGTGAAG]

[+] EMBL CD150275             [TAAGTTGACGTCTCCGTGTCTCATGAGGCCGACGTCCCATTGTGGATCCTAGTGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAATGCAAATATTTGTGAAGACATTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAGTGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAATGCANATATTTGTGAAG]


>consensus_4367#1 TAAGTTGACGTCTCCGTGTCTCATGAGGCCGACGTCCCATTGTGGATCCTAGTGATACTA TTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTT TGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGA AAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAATGCAAATATTTGTGAAGA CATTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAGTGATACTATTGAGAATGTGA AAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATCTTCGCTG GTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAAGAGTCGACTC TGCATCTTGTCCTTCGTCTACGTGGTGGAATGCANATATTTGTGAAG



consensusID : consensus_4367#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 465
fasta sequence
                              [GAGACAAAGGAGGTATTCTTCCTGGCCAACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACGACATCCAGAGAGAGTCGACTTTGCATCTTGTCCTTCGTATACGTGGTGGAATGCAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACATTGGAGGTGGAGCTTAGTGATACTATTGAGAATGTGTAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCTTGACCAACAACGTTTGATATTGGCTGGTAAGCAGTTGGAAGATGTATGAGTTTGGTTTGGCGTCAACATACTGATAGAGTTGAATATGCATCGTGTCCTTGGTATATGTGATGGAAAGAGCATATATGTGCATTATCTTAAGTGTAGATTTTGTAGTGGTGTGCCAGACCCAAAGATTAGTATTTTTGATGTGGGCAAGAAGATAGCAAATGTTG]

[-] EMBL CD201180             [GAGACAAAGGAGGTATTCTTCCTGGCCAACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACGACATCCAGAGAGAGTCGACTTTGCATCTTGTCCTTCGTATACGTGGTGGAATGCAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACATTGGAGGTGGAGCTTAGTGATACTATTGAGAATGTGTAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCTTGACCAACAACGTTTGATATTGGCTGGTAAGCAGTTGGAAGATGTATGAGTTTGGTTTGGCGTCAACATACTGATAGAGTTGAATATGCATCGTGTCCTTGGTATATGTGATGGAAAGAGCATATATGTGCATTATCTTAAGTGTAGATTTTGTAGTGGTGTGCCAGACCCAAAGATTAGTATTTTTGATGTGGGCAAGAAGATAGCAAATGTTG]


>consensus_4367#2 GAGACAAAGGAGGTATTCTTCCTGGCCAACAACGTTTGATCTTCGCTGGTAAGCAGTTGG AAGATGGACGTACTCTGTCTGACTACGACATCCAGAGAGAGTCGACTTTGCATCTTGTCC TTCGTATACGTGGTGGAATGCAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACAT TGGAGGTGGAGCTTAGTGATACTATTGAGAATGTGTAAGCGAAGATCCAAGACAAAGAAG GTATTCCTCTTGACCAACAACGTTTGATATTGGCTGGTAAGCAGTTGGAAGATGTATGAG TTTGGTTTGGCGTCAACATACTGATAGAGTTGAATATGCATCGTGTCCTTGGTATATGTG ATGGAAAGAGCATATATGTGCATTATCTTAAGTGTAGATTTTGTAGTGGTGTGCCAGACC CAAAGATTAGTATTTTTGATGTGGGCAAGAAGATAGCAAATGTTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4367#0      ----TCGNNGCACGAGGAATCTGACAGGGNAAGACTATAACATTGGAGGTGGAGCCTAGT 56
consensus_4367#1      TAAGTTGACGT-CTCCGTGTCTCATGAGGCCGA--CGTCCCATTG----TGGATCCTAGT 53
consensus_4367#2      ------------------------------------------------------------
                                                                                  

consensus_4367#0      GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 116
consensus_4367#1      GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 113
consensus_4367#2      -------------------------------GAGACAAAGGAGGTATTCTTCCTGGCCAA 29
                                                      ******** ******** ***** ****

consensus_4367#0      CAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAAC 176
consensus_4367#1      CAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAAC 173
consensus_4367#2      CAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACGAC 89
                      ********************************************************* **

consensus_4367#0      ATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAATGCAAATATTT 236
consensus_4367#1      ATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAATGCAAATATTT 233
consensus_4367#2      ATCCAGAGAGAGTCGACTTTGCATCTTGTCCTTCGTATACGTGGTGGAATGCAAATATTT 149
                      ******* ********** ***************** ***********************

consensus_4367#0      GTGAAGACATTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAGTGATACTATTGAG 296
consensus_4367#1      GTGAAGACATTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAGTGATACTATTGAG 293
consensus_4367#2      GTGAAGACGTTGACTGGTAAGACGATCACATTGGAGGTGGAGCTTAGTGATACTATTGAG 209
                      ******** ******************** ************* ****************

consensus_4367#0      AATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATC 356
consensus_4367#1      AATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATC 353
consensus_4367#2      AATGTGTAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCTTGACCAACAACGTTTGATA 269
                      ****** ********************************* ****************** 

consensus_4367#0      TTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAAGAG 416
consensus_4367#1      TTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAAGAG 413
consensus_4367#2      TTGGCTGGTAAGCAGTTGGAAGATGTATGAGTTTGGTTTGGCGTCAACATACTGATAGAG 329
                      ** ********************** * *   *  ** ** *  ****** * ** ****

consensus_4367#0      TCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAATGCAAATATTTGTGAAGACGTTG 476
consensus_4367#1      TCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAATGCANATATTTGTGAAG------ 467
consensus_4367#2      TTGAATATGCATCGTGTCCTTGGTATATGTGATGGAAAGAGCATATATGTGCATTATCTT 389
                      * ** * ****** ******* ** ** *** ***** *   **** **** *       

consensus_4367#0      ACTGGTAAGACGATCACATTGGAGGTGGAGCCTAGTGATACTATTGAGAATGTGAAAGCG 536
consensus_4367#1      ------------------------------------------------------------
consensus_4367#2      AAGTGTAGATTTTGTAGTGGTGTGCCAGACCCAAAGATTAGTATTTTTGATGTGGGCAAG 449
                                                                                  

consensus_4367#0      AAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATCTTCGCTGGTAAG 596
consensus_4367#1      ------------------------------------------------------------
consensus_4367#2      AAGATAGCAAATGTTG-------------------------------------------- 465
                                                                                  

consensus_4367#0      CAGTTGGAAGATGGACGTACTCTGTCTGACTACNACATCCAGAAGGA 643
consensus_4367#1      -----------------------------------------------
consensus_4367#2      -----------------------------------------------
                                                                     




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)