These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4367#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 643 fasta sequence [TCGNNGCACGAGGAATCTGACAGGGNAAGACTATAACATTGGAGGTGGAGCCTAGTGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAATGCAAATATTTGTGAAGACATTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAGTGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAATGCAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACATTGGAGGTGGAGCCTAGTGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACNACATCCAGAAGGA] [+] EMBL CD081908 [TCGNNGCACGAGGAATCTGACAGGGNAAGACTATAACATTGGAGGTGGAGCCTAGTGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAATGCAAATATTTGTGAAGACATTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAGTGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAATGCAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACATTGGAGGTGGAGCCTAGTGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACNACATCCAGAAGGA] consensusID : consensus_4367#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 467 fasta sequence [TAAGTTGACGTCTCCGTGTCTCATGAGGCCGACGTCCCATTGTGGATCCTAGTGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAATGCAAATATTTGTGAAGACATTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAGTGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAATGCANATATTTGTGAAG] [+] EMBL CD150275 [TAAGTTGACGTCTCCGTGTCTCATGAGGCCGACGTCCCATTGTGGATCCTAGTGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAATGCAAATATTTGTGAAGACATTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAGTGATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAATGCANATATTTGTGAAG] consensusID : consensus_4367#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence [GAGACAAAGGAGGTATTCTTCCTGGCCAACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACGACATCCAGAGAGAGTCGACTTTGCATCTTGTCCTTCGTATACGTGGTGGAATGCAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACATTGGAGGTGGAGCTTAGTGATACTATTGAGAATGTGTAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCTTGACCAACAACGTTTGATATTGGCTGGTAAGCAGTTGGAAGATGTATGAGTTTGGTTTGGCGTCAACATACTGATAGAGTTGAATATGCATCGTGTCCTTGGTATATGTGATGGAAAGAGCATATATGTGCATTATCTTAAGTGTAGATTTTGTAGTGGTGTGCCAGACCCAAAGATTAGTATTTTTGATGTGGGCAAGAAGATAGCAAATGTTG] [-] EMBL CD201180 [GAGACAAAGGAGGTATTCTTCCTGGCCAACAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACGACATCCAGAGAGAGTCGACTTTGCATCTTGTCCTTCGTATACGTGGTGGAATGCAAATATTTGTGAAGACGTTGACTGGTAAGACGATCACATTGGAGGTGGAGCTTAGTGATACTATTGAGAATGTGTAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCTTGACCAACAACGTTTGATATTGGCTGGTAAGCAGTTGGAAGATGTATGAGTTTGGTTTGGCGTCAACATACTGATAGAGTTGAATATGCATCGTGTCCTTGGTATATGTGATGGAAAGAGCATATATGTGCATTATCTTAAGTGTAGATTTTGTAGTGGTGTGCCAGACCCAAAGATTAGTATTTTTGATGTGGGCAAGAAGATAGCAAATGTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4367#0 ----TCGNNGCACGAGGAATCTGACAGGGNAAGACTATAACATTGGAGGTGGAGCCTAGT 56 consensus_4367#1 TAAGTTGACGT-CTCCGTGTCTCATGAGGCCGA--CGTCCCATTG----TGGATCCTAGT 53 consensus_4367#2 ------------------------------------------------------------ consensus_4367#0 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 116 consensus_4367#1 GATACTATTGAGAATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAA 113 consensus_4367#2 -------------------------------GAGACAAAGGAGGTATTCTTCCTGGCCAA 29 ******** ******** ***** **** consensus_4367#0 CAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAAC 176 consensus_4367#1 CAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAAC 173 consensus_4367#2 CAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACGAC 89 ********************************************************* ** consensus_4367#0 ATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAATGCAAATATTT 236 consensus_4367#1 ATCCAGAAAGAGTCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAATGCAAATATTT 233 consensus_4367#2 ATCCAGAGAGAGTCGACTTTGCATCTTGTCCTTCGTATACGTGGTGGAATGCAAATATTT 149 ******* ********** ***************** *********************** consensus_4367#0 GTGAAGACATTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAGTGATACTATTGAG 296 consensus_4367#1 GTGAAGACATTGACTGGTAAGACGATCACGTTGGAGGTGGAGCCTAGTGATACTATTGAG 293 consensus_4367#2 GTGAAGACGTTGACTGGTAAGACGATCACATTGGAGGTGGAGCTTAGTGATACTATTGAG 209 ******** ******************** ************* **************** consensus_4367#0 AATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATC 356 consensus_4367#1 AATGTGAAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATC 353 consensus_4367#2 AATGTGTAAGCGAAGATCCAAGACAAAGAAGGTATTCCTCTTGACCAACAACGTTTGATA 269 ****** ********************************* ****************** consensus_4367#0 TTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAAGAG 416 consensus_4367#1 TTCGCTGGTAAGCAGTTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAAGAG 413 consensus_4367#2 TTGGCTGGTAAGCAGTTGGAAGATGTATGAGTTTGGTTTGGCGTCAACATACTGATAGAG 329 ** ********************** * * * ** ** * ****** * ** **** consensus_4367#0 TCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAATGCAAATATTTGTGAAGACGTTG 476 consensus_4367#1 TCGACTCTGCATCTTGTCCTTCGTCTACGTGGTGGAATGCANATATTTGTGAAG------ 467 consensus_4367#2 TTGAATATGCATCGTGTCCTTGGTATATGTGATGGAAAGAGCATATATGTGCATTATCTT 389 * ** * ****** ******* ** ** *** ***** * **** **** * consensus_4367#0 ACTGGTAAGACGATCACATTGGAGGTGGAGCCTAGTGATACTATTGAGAATGTGAAAGCG 536 consensus_4367#1 ------------------------------------------------------------ consensus_4367#2 AAGTGTAGATTTTGTAGTGGTGTGCCAGACCCAAAGATTAGTATTTTTGATGTGGGCAAG 449 consensus_4367#0 AAGATCCAAGACAAAGAAGGTATTCCTCCTGACCAACAACGTTTGATCTTCGCTGGTAAG 596 consensus_4367#1 ------------------------------------------------------------ consensus_4367#2 AAGATAGCAAATGTTG-------------------------------------------- 465 consensus_4367#0 CAGTTGGAAGATGGACGTACTCTGTCTGACTACNACATCCAGAAGGA 643 consensus_4367#1 ----------------------------------------------- consensus_4367#2 ----------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||