cluster # 4368

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Schistosoma mansoni
cluster # 4368 cluster # 4368 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4368#0 length = 448 sequences # 1

consensus_4368#1 length = 421 sequences # 1
consensus_4368#2 length = 85 sequences # 1

consensusID : consensus_4368#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 448
fasta sequence

                              [ATCGCAACATTTGTCGACGTTTAATTATATCTATAATGTCTAGTACTAGTTCAGTATTAAAAAGTCATATGTGGTCTGTTGATTTTGCACCTGCTCCAAGTAATATTATTTGGGCAAATCTAGCAGCTACGAGAACTGTATGGTGGTGTCGAGCAATTTTCATTAACTTGTGCGTTTTCTTCGTGGTGTTTTTTCTTACTACTCCTACATATGTATTGAATTTAGTTAATACATTGCATTTAACTGAACGTCTACAAATTAATAATCCACTATTGATTCAATTTATTCCATCTATTATTCTTTGGTCGGTTTCTGCTTTATTACCTTACATTGTATTCAATTCAGATCGACTTGTTGGTCATTGGACTAAATCTGTTCTACATTTAACTGTAATGATTAAGACATACACTTTATTAATTTTAATGATTTTAGTACTTCCATCACTTGG]

[+] EMBL CD096984             [ATCGCAACATTTGTCGACGTTTAATTATATCTATAATGTCTAGTACTAGTTCAGTATTAAAAAGTCATATGTGGTCTGTTGATTTTGCACCTGCTCCAAGTAATATTATTTGGGCAAATCTAGCAGCTACGAGAACTGTATGGTGGTGTCGAGCAATTTTCATTAACTTGTGCGTTTTCTTCGTGGTGTTTTTTCTTACTACTCCTACATATGTATTGAATTTAGTTAATACATTGCATTTAACTGAACGTCTACAAATTAATAATCCACTATTGATTCAATTTATTCCATCTATTATTCTTTGGTCGGTTTCTGCTTTATTACCTTACATTGTATTCAATTCAGATCGACTTGTTGGTCATTGGACTAAATCTGTTCTACATTTAACTGTAATGATTAAGACATACACTTTATTAATTTTAATGATTTTAGTACTTCCATCACTTGG]




>consensus_4368#0
ATCGCAACATTTGTCGACGTTTAATTATATCTATAATGTCTAGTACTAGTTCAGTATTAA
AAAGTCATATGTGGTCTGTTGATTTTGCACCTGCTCCAAGTAATATTATTTGGGCAAATC
TAGCAGCTACGAGAACTGTATGGTGGTGTCGAGCAATTTTCATTAACTTGTGCGTTTTCT
TCGTGGTGTTTTTTCTTACTACTCCTACATATGTATTGAATTTAGTTAATACATTGCATT
TAACTGAACGTCTACAAATTAATAATCCACTATTGATTCAATTTATTCCATCTATTATTC
TTTGGTCGGTTTCTGCTTTATTACCTTACATTGTATTCAATTCAGATCGACTTGTTGGTC
ATTGGACTAAATCTGTTCTACATTTAACTGTAATGATTAAGACATACACTTTATTAATTT
TAATGATTTTAGTACTTCCATCACTTGG

consensusID : consensus_4368#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 421
fasta sequence

                              [TAGTTGTTTTGTTTTAGTATAAAGCTCTTCATCAATGCGCATCCACAAACTCACTAAGGATCAGACCCAGGACCTTCAAGTGGAGTCTTGCACGTTCATTATTGAGGAATCTCTTACTGGAACAAAGTAGCTGTTCAGTATTTCTTAGTTTTTAGTAGTTGTTTTACTAACGTTAGTCAGTAATGTAAAAGTCTATGTTAACATTTCTGTTTTCTATATTTCTCATCCAATAGAATCCACTATTGATTCAATTTATTCCATCTATTATTCTTTGGTCGGTTTCTGCTTTATTACCTTACATTGTATTCAATTCAGATCGACTTGTTGGTCATTGGACTAAATCTGTTCTACATTTAACTGTAATGATTAAGACATACACTTTATTAATTNTAATGATTTTGGTACTTCCATCACTTGGCCT]

[+] EMBL CD067035             [TAGTTGTTTTGTTTTAGTATAAAGCTCTTCATCAATGCGCATCCACAAACTCACTAAGGATCAGACCCAGGACCTTCAAGTGGAGTCTTGCACGTTCATTATTGAGGAATCTCTTACTGGAACAAAGTAGCTGTTCAGTATTTCTTAGTTTTTAGTAGTTGTTTTACTAACGTTAGTCAGTAATGTAAAAGTCTATGTTAACATTTCTGTTTTCTATATTTCTCATCCAATAGAATCCACTATTGATTCAATTTATTCCATCTATTATTCTTTGGTCGGTTTCTGCTTTATTACCTTACATTGTATTCAATTCAGATCGACTTGTTGGTCATTGGACTAAATCTGTTCTACATTTAACTGTAATGATTAAGACATACACTTTATTAATTNTAATGATTTTGGTACTTCCATCACTTGGCCT]




>consensus_4368#1
TAGTTGTTTTGTTTTAGTATAAAGCTCTTCATCAATGCGCATCCACAAACTCACTAAGGA
TCAGACCCAGGACCTTCAAGTGGAGTCTTGCACGTTCATTATTGAGGAATCTCTTACTGG
AACAAAGTAGCTGTTCAGTATTTCTTAGTTTTTAGTAGTTGTTTTACTAACGTTAGTCAG
TAATGTAAAAGTCTATGTTAACATTTCTGTTTTCTATATTTCTCATCCAATAGAATCCAC
TATTGATTCAATTTATTCCATCTATTATTCTTTGGTCGGTTTCTGCTTTATTACCTTACA
TTGTATTCAATTCAGATCGACTTGTTGGTCATTGGACTAAATCTGTTCTACATTTAACTG
TAATGATTAAGACATACACTTTATTAATTNTAATGATTTTGGTACTTCCATCACTTGGCC
T

consensusID : consensus_4368#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 85
fasta sequence

                              [GGATAGTTGTTTTGTTTTAATATAAAGCTCTACATCAATGCGCATTCACAAACTCACTAAGGATCAGACCCTGGACCTTCTTGTG]

[+] EMBL CD067500             [GGATAGTTGTTTTGTTTTAATATAAAGCTCTACATCAATGCGCATTCACAAACTCACTAAGGATCAGACCCTGGACCTTCTTGTG]




>consensus_4368#2
GGATAGTTGTTTTGTTTTAATATAAAGCTCTACATCAATGCGCATTCACAAACTCACTAA
GGATCAGACCCTGGACCTTCTTGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4368#1      -------------TAGTTGTTTTGTTTTAG-TATAAAGCTCTTCATCAATGCGCATCCAC 46
consensus_4368#2      ----------GGATAGTTGTTTTGTTTTAA-TATAAAGCTCTACATCAATGCGCATTCAC 49
consensus_4368#0      ATCGCAACATTTGTCGACGTTTAATTATATCTATAATGTCTAGTACTAGTTCAGTATTAA 60
                                   * *  ****  ** **  ***** *      *  * * *      * 

consensus_4368#1      AAACTCACTAAGGATCAG---ACCCAGGACCTTCAAGTGGAGTCTTGCACGTTCATTATT 103
consensus_4368#2      AAACTCACTAAGGATCAG---ACCCTGGACCTTCTTGTG--------------------- 85
consensus_4368#0      AAAGTCATATGTGGTCTGTTGATTTTGCACCTGCTCCAAGTAATATTATTTGGGCAAATC 120
                      *** ***     * ** *   *    * **** *                          

consensus_4368#1      GAGGAATCTCTTACTGGAACAAAGTAGCTGTTCAGTATTTCTTAGTTTTTAGTAGTTGTT 163
consensus_4368#2      ------------------------------------------------------------
consensus_4368#0      TAGCAGCTACGAGAACTGTATGGTGGTGTCGAGCAATTTTCATTAACTTGTGCGTTTTCT 180
                                                                                  

consensus_4368#1      TTACTAACGTTAGTCAGTAATGTAAAAGTCTATGTTAACATTTCTGTTTTCTATATTTCT 223
consensus_4368#2      ------------------------------------------------------------
consensus_4368#0      TCGTGGTGTTTTTTCTTACTACTCCTACATATGTATTGAATTTAGTTAATACATTGCATT 240
                                                                                  

consensus_4368#1      CATCCAATAGAATCCACTATTGATTCAATTTATTCCATCTATTATTCTTTGGTCGGTTTC 283
consensus_4368#2      ------------------------------------------------------------
consensus_4368#0      TAACTGAACGTCTACAAATTAATAATCCACTATTGATTCAATTTATTCCATCTATTATTC 300
                                                                                  

consensus_4368#1      TGCTTTATTACCTTACATTGTATTCAATTCAGATCGACTTGTTGGTCATTGGACTAAATC 343
consensus_4368#2      ------------------------------------------------------------
consensus_4368#0      TTTGGTCGGTTTCTGCTTTATTACCTTACATTGTATTCAATTCAGATCGACTTGTTGGTC 360
                                                                                  

consensus_4368#1      TGTTCTACATTTAACTGTAATGATTAAGACATACACTTTATTAATTNTAATGATTTTGGT 403
consensus_4368#2      ------------------------------------------------------------
consensus_4368#0      ATTGGACTAAATCTGTTCTACATTTAACTGTAATGATTAAGACATACACTTTATTAATTT 420
                                                                                  

consensus_4368#1      ACTTCCATCACTTGGCCT---------- 421
consensus_4368#2      ----------------------------
consensus_4368#0      TAATGATTTTAGTACTTCCATCACTTGG 448