These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4370#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 981 fasta sequence [CAGCCANAATTCTGCACGAGGGATCGTTCCTAGTGTGTCTACTTTGACAGAGTAAATCTGTTAAGTTAATTCAAGATAACAATCTCTAATATTCTAGTGATTCGACTATACTTTTTGAGCACTCACTTAGGTAATAATCTGGTCCACTAACCCGTGTGTCTCAGCTATTCAATATATTTTCCCAATTATGTCTATGTAGAAACGTTTTTGTATCATGGCTTTCGTGTTATGGCTAACAATACTATTAAGTTGTTCTAGGTGTTTGGAAACTATTAAATTGGGTTTCAGATCTAACCTATTACTTTACTTTGAGTTTGGAAAAATGCAGTCCACTTATCACGTATGTTATCTATCATTTTAGCATGTTTCTAAGCTTTTATCTAGTGGACATCGAGAAGACAAACTACCTTTATACTCGGAACCGCACATTCCCGAAGTTGCATATCACAGCTATAATTCTTTTGTACAGTTTCCTCCGATAGTTAAAAGTCGTATACTCAGGTGTTTTCGTTGTTGCTTAACTGTACATGCTAGATGTTATGGTGTACAAGATGAAATTGGATTTAAATATGAGTCTTCATCAGAACAAAAATATAATCTGAACTTGAAAAATTCTTGGTATTGTGATGCGTGTATGGCGAGTCCAAAACCCACATGCGTATTTTGTTATATGCGCGGAGGAGCAATTAAAGCATTAGCCAACATCAATAATACATTTACTGGACGACCTTACTGGGCACATTTAGTTTGTGCACTAATTACTCCAGGTTGCTATTTTAAAGATGTACCTAAACGATTGGCATTTATTTCTGAAGATACGATCAAGTCAGCTGTATCTTTAGCCATATTATATTCAAGCGAAAGTAATGAACGTGTGATTAATGAAATGCAAAATATCAGTTCCCCAAATCACGTATCTGAGGATATTCCTTTCAAATCTTCATGTCATTTACAAAGGAATTTGAAACTAATGCGCAAGAA] [+] EMBL CD080797 [CAGCCANAATTCTGCACGAGGGATCGTTCCTAGTGTGTCTACTTTGACAGAGTAAATCTGTTAAGTTAATTCAAGATAACAATCTCTAATATTCTAGTGATTCGACTATACTTTTTGAGCACTCACTTAGGTAATAATCTGGTCCACTAACCCGTGTGTCTCAGCTATTCAATATATTTTCCCAATTATGTCTATGTAGAAACGTTTTTGTATCATGGCTTTCGTGTTATGGCTAACAATACTATTAAGTTGTTCTAGGTGTTTGGAAACTATTAAATTGGGTTTCAGATCTAACCTATTACTTTACTTTGAGTTTGGAAAAATGCAGTCCACTTATCACGTATGTTATCTATCATTTTAGCATGTTTCTAAGCTTTTATCTAGTGGACATCGAGAAGACAAACTACCTTTATACTCGGAACCGCACATTCCCGAAGTTGCATATCACAGCTATAATTCTTTTGTACAGTTTCCTCCGATAGTTAAAAGTCGTATACTCAGGTGTTTTCGTTGTTGCTTAACTGTACATGCTAGATGTTATGGTGTACAAGATGAAATTGGATTTAAATATGAGTCTTCATCAGAACAAAAATATAATCTGAACTTGAAAAATTCTTGGTATTGTGATGCGTGTATGGCGAGTCCAAAACCCACATGCGTATTTTGTTATATGCGCGGAGGAGCAATTAAAGCATTAGCCAACATCAATAATACATTTACTGGACGACCTTACTGGGCACATTTAGTTTGTGCACTA ] [-] EMBL BG931710 [ CGCGGAGGAGCAATTAAAGCATTAGCCAACATCAATAATACATTTACTGGACGACCTTACTGGGCACATTTAGTTTGTGCACTAATTACTCCAGGTTGCTATTTTAAAGATGTACCTAAACGATTGGCATTTATTTCTGAAGATACGATCAAGTCAGCTGTATCTTTAGCCATATTATATTCAAGCGAAAGTAATGAACGTGTGATTAATGAAATGCAAAATATCAGTTCCCCAAATCACGTATCTGAGGATATTCCTTTCAAATCTTCATGTCATTTACAAAGGAATTTGAAACTAATGCGCAAGAA] consensusID : consensus_4370#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 334 fasta sequence [TATTCCAAGCCAGCCCTTTGGGGGATGCACATGCAAAAAAGAAACTGATCAAAATTCGCTCACTAACATCAATAACAGGAGGATAATTTTGTTCTTAACTCTAAATAGCCGGTTTTTTGTTTATTATTAACGTAAAATACTTGAGGCCTTATCTAACTATTGACGTGTATCAACATTTTGTATTGATAGTTCCTAGTGTGTCTACTTTGACAGAGTAAATCTGTTAAGTTAATTCAAGATAACAATCTCTAATATTCTAGTGATTCGACTATACTTTTTGAGCACTCACTTAGGTAATAATCTGGTCCACTAACCCGTGTGTCTCAGCTATTCA] [-] EMBL CD186001 [TATTCCAAGCCAGCCCTTTGGGGGATGCACATGCAAAAAAGAAACTGATCAAAATTCGCTCACTAACATCAATAACAGGAGGATAATTTTGTTCTTAACTCTAAATAGCCGGTTTTTTGTTTATTATTAACGTAAAATACTTGAGGCCTTATCTAACTATTGACGTGTATCAACATTTTGTATTGATAGTTCCTAGTGTGTCTACTTTGACAGAGTAAATCTGTTAAGTTAATTCAAGATAACAATCTCTAATATTCTAGTGATTCGACTATACTTTTTGAGCACTCACTTAGGTAATAATCTGGTCCACTAACCCGTGTGTCTCAGCTATTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4370#0 CAGCCANAATTCTGCACGAGGGATCGTTCCTAGTGTGTCTACTTTGACAGAGTAAATCTG 60 consensus_4370#1 ------------------------------------------------------------ consensus_4370#0 TTAAGTTAATTCAAGATAACAATCTCTAATATTCTAGTGATTCGACTATACTTTTTGAGC 120 consensus_4370#1 ------------------------------------------------------------ consensus_4370#0 ACTCACTTAGGTAATAATCTGGTCCACTAACCCGTGTGTCTCAGCTATTCAATAT--ATT 178 consensus_4370#1 ---------------------------------------------TATTCCAAGCCAGCC 15 ***** * consensus_4370#0 TTCCCAATTATGTCTATGTAGAAACGTTTTTGTATCATGGCTTTCGTGTTATGGCTAACA 238 consensus_4370#1 CTTTGGGGGATGCACATGCAAAAAAGAAACTG-ATCAAAATTCGCTCACTAA---CATCA 71 * *** *** * *** * ** **** * * ** * ** consensus_4370#0 ATACTATTAAGTTGTTCTAGGTGTTTGGAAACTATTAAATTGGGTTTCAGATCTAACCTA 298 consensus_4370#1 ATAACAGGAGGATAATTTTGTTCTT--AACTCTAAATAGCCGGTTTTTTGTT------TA 123 *** * * * * * * * * ** * *** * ** *** * * ** consensus_4370#0 TTACTTTACTTTGAGTTTGGAAAAATGCAGTCCACTTATCACGTATGTTATC-TATCATT 357 consensus_4370#1 TTA-TTAACGTAAAATACTTGAGGCCTTATCTAACTATTGACGTGTATCAACATTTTGTA 182 *** ** ** * * * * * *** * **** * * * * * * * consensus_4370#0 TTAGCATGTTTCTAAGCTTTTATCTAGTGGACATCGAGAAGACAAACTACCTTTATACTC 417 consensus_4370#1 TTGATA-GTTCCTAGTGTGTCTACT--TTGACA--GAGTAAATCTGTTAAGTTAAT--TC 235 ** * *** *** * * ** * **** *** * * ** ** ** ** consensus_4370#0 GGAACCGCACATTCCCGAAGTTGCATATCACAGCTATAATTCTTTTGTACAGTTTCCTCC 477 consensus_4370#1 AAGATAACAATCTCTAATATTCTAGTGATTCGACTATACTTTTTGAGCACTCACTTAGGT 295 * ** ** * * * * ***** ** ** * ** * consensus_4370#0 GATAGTTAAAAGTCGTATACTCAGGTGTTTTCGTTGTTGCTTAACTGTACATGCTAGATG 537 consensus_4370#1 AATAATCTGGT-CCACTAACCCGTGTGTCTCAGCTATTCA-------------------- 334 *** * * ** * **** * * * ** consensus_4370#0 TTATGGTGTACAAGATGAAATTGGATTTAAATATGAGTCTTCATCAGAACAAAAATATAA 597 consensus_4370#1 ------------------------------------------------------------ consensus_4370#0 TCTGAACTTGAAAAATTCTTGGTATTGTGATGCGTGTATGGCGAGTCCAAAACCCACATG 657 consensus_4370#1 ------------------------------------------------------------ consensus_4370#0 CGTATTTTGTTATATGCGCGGAGGAGCAATTAAAGCATTAGCCAACATCAATAATACATT 717 consensus_4370#1 ------------------------------------------------------------ consensus_4370#0 TACTGGACGACCTTACTGGGCACATTTAGTTTGTGCACTAATTACTCCAGGTTGCTATTT 777 consensus_4370#1 ------------------------------------------------------------ consensus_4370#0 TAAAGATGTACCTAAACGATTGGCATTTATTTCTGAAGATACGATCAAGTCAGCTGTATC 837 consensus_4370#1 ------------------------------------------------------------ consensus_4370#0 TTTAGCCATATTATATTCAAGCGAAAGTAATGAACGTGTGATTAATGAAATGCAAAATAT 897 consensus_4370#1 ------------------------------------------------------------ consensus_4370#0 CAGTTCCCCAAATCACGTATCTGAGGATATTCCTTTCAAATCTTCATGTCATTTACAAAG 957 consensus_4370#1 ------------------------------------------------------------ consensus_4370#0 GAATTTGAAACTAATGCGCAAGAA 981 consensus_4370#1 ------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||