These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4384#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 561 fasta sequence [ACCCAACCATTCATCTACCCATCTATCAAACGACCAACACTTCTTACACACACCCATTCACTCACTCACTCACTCACTTCAAATAACTAACCTCAAATCACAAACACTTCTTACACACAAAACAAATACATTCGTATCACTACAACTACAATTTACAATCCTACTACATCCATTCAATTCATCACATCACTGTCAGAAGACAAAACTAATAGTCATCAAGTTAATAACAGATGTCCCTATCTTAAGTCATTCATCATACACAGATTATTAACTAATCATAATAATCAATAAACACACTCACCTCTTCGCCACACTCAAAAACCACACATCCTATGCTGTACTATCCAGTTAGTTCTACTACGACCCAACACCAACACCAACACCAACACCAACACCAACCAACCTGAAATAAACAAACAAATATACATAAACAATTAACATCTCAATCAATCATTATTATTATTATTATTATTTCTCATACACACACACACACACCATATGACATCAACATCAGTGGTTCCTTAGAAGTAAACGGCATATTAACATGTATACCGAAAGGTC] [+] EMBL CD085069 [ACCCAACCATTCATCTACCCATCTATCAAACGACCAACACTTCTTACACACACCCATTCACTCACTCACTCACTCACTTCAAATAACTAACCTCAAATCACAAACACTTCTTACACACAAAACAAATACATTCGTATCACTACAACTACAATTTACAATCCTACTACATCCATTCAATTCATCACATCACTGTCAGAAGACAAAACTAATAGTCATCAAGTTAATAACAGATGTCCCTATCTTAAGTCATTCATCATACACAGATTATTAACTAATCATAATAATCAATAAACACACTCACCTCTTCGCCACACTCAAAAACCACACATCCTATGCTGTACTATCCAGTTAGTTCTACTACGACCCAACACCAACACCAACACCAACACCAACACCAACCAACCTGAAATAAACAAACAAATATACATAAACAATTAACATCTCAATCAATCATTATTATTATTATTATTATTTCTCATACACACACACACACACCATATGACATCAACATCAGTGGTTCCTTAGAAGTAAACGGCATATTAACATGTATACCGAAAGGTC] consensusID : consensus_4384#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 551 fasta sequence [TCGCAAGGTGGTTCAGTGGCCCTTTATAATGCACTAACGAGCACTTTACAGTATGGTGGGGTTGTTGCTTTCAGTTGTTGGCTTCCACTCCATACAAAATTTATGTCCTCACCCACACTCTTGACTATGCCCAAGGATGTACCAGTTTTCCAGTGTCATGGATTGGAGGATTATACAATTCCCTTTGCCATGGGAAAGCTAACTCATGAGCTTTTAAAAACTTTCCAGTTATCCAAATGTGAACTCAACTGTTATCCTCAATTATCTCACTCATCATGTGAAAAGGAAATGGGAGATCTCCGAACGTTCTTGTC--AAAAACATACCTGCTTGCTGATTTTTGNTACCGTATGNTCATAATTGTCAATATATGAAAGTTGTTCTACTGCGATCCTAACTACAAGTATTAATCTTTTCACTAAGTTCTTGACTTCTATTGCTTGGCGTGCTATGTATTAGTCATCCAGTCTGTCTAGTTCACGTACATTCTGTCTCGTATCTGAAGAATTCGCCAATTGTTTGTAATTCGGAATCACCGCAGGCTATTTGAAAT] [+] EMBL CD141194 [TCGCAAGGTGGTTCAGTGGCCCTTTATAATGCACTAACGAGCACTTTACAGTATGGTGGGGTTGTTGCTTTCAGTTGTTGGCTTCCACTCCATACAAAATTTATGTCCTCACCCACACTCTTGACTATGCCCAAGGATGTACCAGTTTTCCAGTGTCATGGATTGGAGGATTATACAATTCCCTTTGCCATGGGAAAGCTAACTCATGAGCTTTTAAAAACTTTCCAGTTATCCAAATGTGAACTCAACTGTTATCCTCAATTATCTCACTCATCATGTGAAAAGGAAATGGGAGATCTCCGAACGTTCTTGTC AAAAACATACCTGCTTGCTGATTTTTGNTACCGTATGN ] [+] EMBL CD062981 [ ACTTTCCAGTTATCCAAATGTGAACTCAACTGTTATCCTCAATTATCTCACTCATCATGTGAAAAGGAAATGGGAGATCTCCGAACGTTCTTGTCAAAAAAACATACCTGCTTGCTGATTTTTGTTACCGTATGGTCATAATTGTCAATATATGAAAGTTGTTCTACTGCGATCCTAACTACAAGTATTAATCTTTTCACTAAGTTCTTGACTTCTATTGCTTGGCGTGCTATGTATTAGTCATCCAGTCTGTCTAGTTCACGTACATTCTGTCTCGTATCTGAAGAATTCGCCAATTGTTTGTAATTCGGAATCACCGCAGGCTATTTGAAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4384#0 --ACCCAACCATTCATCTACCCATCT--ATCAAACGACCAACACTTCTTA-CACACACCC 55 consensus_4384#1 TCGCAAGGTGGTTCAGTGGCCCTTTATAATGCACTAACGAGCACTTTACAGTATGGTGGG 60 * **** *** * ** * ** * ***** * * consensus_4384#0 ATTCACTCACTCACTCACTCACTTCAAATAACTAACCTCAAATCACAAACACTTCTTACA 115 consensus_4384#1 GTTGTTGCTTTCAGTTGTTGGCTTCCACT---CCATACAAAATTTATGTCCTCACCCACA 117 ** * *** * * **** * * * **** * * *** consensus_4384#0 CACAAAACAAATACATTCGTAT-CACTACAACTACAATTTACAATCCTACTACATCCATT 174 consensus_4384#1 CTCTTGACTA-TGCCCAAGGATGTACCAGTTTTCCAGTGT-CATGGATTGGAGGATTATA 175 * * ** * * * * ** ** * * ** * * ** * * ** consensus_4384#0 CAATTCATCACATCACTGTCAGAAGACAAAACTAATAGTCATCAAGTTAATAACAGATGT 234 consensus_4384#1 CAATTCCCT---TTGCCATGGGAAAGCTAACTCATGAGCTTTTAAAAACTTTCCAGTTAT 232 ****** * * * *** * ** * ** * ** * *** * * consensus_4384#0 CCCTATCTTAAGTCATTCATCATACACAGATTATTAACTAATCATAATAATCAATAAACA 294 consensus_4384#1 CCAAATGTGAACTCAACTGTTATCCTCAATTATCTCACTCATCATGTGAAAAGGAAATGG 292 ** ** * ** *** * ** * ** * * *** ***** ** ** consensus_4384#0 CACTCACCTCTTCGCCACACTCAAAAACCACACATCCTATGCTGTACTATCCAGTTAGTT 354 consensus_4384#1 GAGATCTCCGAACGTTCTTGTCAAAAAC-ATACCTGCT-TGCTG-ATTTTTGNTACCGTA 349 * * ** ******** * ** * ** ***** * * * ** consensus_4384#0 CTACTACGACCCAACACCAACAC-CAACACCAACACCAACACCAACCAACCTGAAATAAA 413 consensus_4384#1 TGNTCATAATT----GTCAATATATGAAAGTTGTTCTACTGCGATCCTAACTACAAGTAT 405 * * *** * * * * * * * ** * ** ** * consensus_4384#0 CAAACAAATATACATAAACAATTAACATCTCAATCAATCATTATTAT-TATTA-TTATTA 471 consensus_4384#1 TAATC--TTTTCACTAAGTTCTTGACTTCTATTGCTTGGCGTGCTATGTATTAGTCATCC 463 ** * * * *** ** ** *** * * *** ***** * ** consensus_4384#0 TTTCTCATACACACACACACACACCATATGACATCAACATCAGTGGTTCCTTAGAAGTAA 531 consensus_4384#1 AGTCTGTCTAGTTCACGTACATTCTGTCTCGTATCTGAAGAATTCGCCAATTGTTTGTAA 523 *** *** *** * * * *** * * * * ** **** consensus_4384#0 A-CGGCATATTAACATGTATACCGAAAGGTC 561 consensus_4384#1 TTCGGAATCACCGCAGGCTATTTGAAAT--- 551 *** ** ** * **** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||