cluster # 439

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 439 cluster # 439 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_439#0 length = 299 sequences # 1

consensus_439#1 length = 155 sequences # 1

consensusID : consensus_439#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 299
fasta sequence

                              [AAACACCCAGATTGCAACTGATAAGTATCAGGTTCAATCAGTGCTCCATTTACTCCGGTTTTTTCTCAGCCTACTCACATAAAAAATATTTGACTCAAAGCTGGGTACGTAAACTGTAATGAATAAATGAGTTAAATTATTGTTATTATTCACTTGTTATTGTTTGGTTGAATCTTCCCATTGACGTTTCTGACTGCAATCGGTCAGTACTGGGTTCGAGTCCCAGAGTGAATATCAACTCTGAGATGCAGTTACATCCAGCTGACGAGCCCCGAATAGGACGAAACACGCGTCCTGGA]

[+] EMBL CD136185             [AAACACCCAGATTGCAACTGATAAGTATCAGGTTCAATCAGTGCTCCATTTACTCCGGTTTTTTCTCAGCCTACTCACATAAAAAATATTTGACTCAAAGCTGGGTACGTAAACTGTAATGAATAAATGAGTTAAATTATTGTTATTATTCACTTGTTATTGTTTGGTTGAATCTTCCCATTGACGTTTCTGACTGCAATCGGTCAGTACTGGGTTCGAGTCCCAGAGTGAATATCAACTCTGAGATGCAGTTACATCCAGCTGACGAGCCCCGAATAGGACGAAACACGCGTCCTGGA]




>consensus_439#0
AAACACCCAGATTGCAACTGATAAGTATCAGGTTCAATCAGTGCTCCATTTACTCCGGTT
TTTTCTCAGCCTACTCACATAAAAAATATTTGACTCAAAGCTGGGTACGTAAACTGTAAT
GAATAAATGAGTTAAATTATTGTTATTATTCACTTGTTATTGTTTGGTTGAATCTTCCCA
TTGACGTTTCTGACTGCAATCGGTCAGTACTGGGTTCGAGTCCCAGAGTGAATATCAACT
CTGAGATGCAGTTACATCCAGCTGACGAGCCCCGAATAGGACGAAACACGCGTCCTGGA

consensusID : consensus_439#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 155
fasta sequence

                              [GAAGTACAGATTGTTCGAGGTGAGCGAAAGGATTGCAACCCCGCAAAGGTCATCCGTGTTTACCGGACGAAATATGTAATCCACATCGGGAGGCTACAATGTCGTAAAATGAATGGAGCAAAAGCAGAACGTTGTTAAGGCGGCGGGGAAGACGC]

[+] EMBL CD184254             [GAAGTACAGATTGTTCGAGGTGAGCGAAAGGATTGCAACCCCGCAAAGGTCATCCGTGTTTACCGGACGAAATATGTAATCCACATCGGGAGGCTACAATGTCGTAAAATGAATGGAGCAAAAGCAGAACGTTGTTAAGGCGGCGGGGAAGACGC]




>consensus_439#1
GAAGTACAGATTGTTCGAGGTGAGCGAAAGGATTGCAACCCCGCAAAGGTCATCCGTGTT
TACCGGACGAAATATGTAATCCACATCGGGAGGCTACAATGTCGTAAAATGAATGGAGCA
AAAGCAGAACGTTGTTAAGGCGGCGGGGAAGACGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_439#0      AAACACCCAGATTGCAACTGATAAGTATCAGGTTCAATCAGTGCTCCATTTACTCCGGTT 60
consensus_439#1      ------------------------------------------------------------
                                                                                 

consensus_439#0      TTTTCTCAGCCTACTCACATAAAAAATATTTGACTCAAAGCTGGGTACGTAAACTGTAAT 120
consensus_439#1      -------------------------------------------GAAGTACAGATTGTTCG 17
                                                                *      * * ***   

consensus_439#0      GAATAAATGAGTTAAATTATTGTTATTATTCACTTGTTATTGTTTGGTTGAATCTTCCCA 180
consensus_439#1      ----AGGTGAGCGAAAGGATTGCAACCCCGCAAAGGTCAT-------CCGTGTTTACCGG 66
                         *  ****  ***  ****  *     **   ** **         *  * * **  

consensus_439#0      TTGACGTTTCTGACTGCAATCGGTCAGTACTGGGTTCGAGTCCCAGAGTGAAT--ATCAA 238
consensus_439#1      ACGAAATATGTAATCCACATCGG--GAGGCTACAAT---GTCGTAAAATGAATGGAGCAA 121
                       **  * * * *     *****      **    *   ***  * * *****  * ***

consensus_439#0      CTCTGAGATGCAGTTACATCCAGCTGACGAGCCCCGAATAGGACGAAACACGCGTCCTGG 298
consensus_439#1      AAGCAGAACGTTGTTA-AGGCGGCGGGGAAGACGC------------------------- 155
                            * *  **** *  * ** *   ** * *                         

consensus_439#0      A 299
consensus_439#1      -