These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4404#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 220 fasta sequence [CATATGCAAATGATTTTAGAGCTTATTTTTGATTGAAACTCTGACTTCAGTTTCAGTTTGGAAAGGACAGGAGGCTTGATGGCCTGTGTTAGTCCTGGCAATGATGGTCTCTCAGCTGATCCAACTTTCTTTTGAAACAGTCGACGGATGGAGCCTCAACCACGTGCTGAGGTAATGAATTCCACTCGTTGATTATTCGATGGGAAAGTCGGTAGTCAGC] [+] EMBL CD200082 [CATATGCAAATGATTTTAGAGCTTATTTTTGATTGAAACTCTGACTTCAGTTTCAGTTTGGAAAGGACAGGAGGCTTGATGGCCTGTGTTAGTCCTGGCAATGATGGTCTCTCAGCTGATCCAACTTTCTTTTGAAACAGTCGACGGATGGAGCCTCAACCACGTGCTGAGGTAATGAATTCCACTCGTTGATTATTCGATGGGAAAGTCGGTAGTCAGC] [+] EMBL CD200103 [CATATGCAAATGATTTTAGAGCTTATTTTTGATTGAAACTCTGACTTCAGTTTCAGTTTGGAAAGGACAGGAGGCTTGATGGCCTGAGTTAGCCCTGGCATTGATGGACTCTCAGCTGATCCAACTTTCTTTTGAAACAGTCGACGGATG ] consensusID : consensus_4404#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 165 fasta sequence [GATCTGTACGCGAACACTGTGTTGTCAGGTGGTACGACAAATGTTCCCAGGTATTGCTGATCGTATGCAGAAAGAGATCANAGCATTGGCACCGAACACAATGAAGATCAAGATAGAGTGGTGCAGCCTGAACTGCGTAAAAATTGCGCGTTCGCATTCGTGCGG] [+] EMBL SMAA28844 [GATCTGTACGCGAACACTGTGTTGTCAGGTGGTACGACAAATGTTCCCAGGTATTGCTGATCGTATGCAGAAAGAGATCANAGCATTGGCACCGAACACAATGAAGATCAAGATAGAGTGGTGCAGCCTGAACTGCGTAAAAATTGCGCGTTCGCATTCGTGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4404#0 CATATGCAAATGATTTTAGAGCTTATTTTTGATTGAA-ACTCTGACTTCAGTTTCAGTTT 59 consensus_4404#1 -----------------------GATCTGTACGCGAACACTGTGTTGTCAGGTGGTACGA 37 ** * * *** *** ** **** * consensus_4404#0 GGAAAGGACAGGAGGCTTGATGGCC-TGTGTTAGTCCTGGCAATGATGGTCTCTCAGCTG 118 consensus_4404#1 CAAATGTTCCCAGGTATTGCTGATCGTATGCAGAA---AGAGATCANAGCATTGGCACCG 94 ** * * * *** ** * * ** * ** * * * * * consensus_4404#0 ATCCAACTTTCTTTTGAAACAGTCGACGGATGGAGCCTCAACCACGTGCTGAGGTAATGA 178 consensus_4404#1 AACACAATGAAGATCAAGATAG---AGTGGTGCAGCCTGAACTGCGTA--AAAATTGCGC 149 * * * * * * * ** * * ** ***** *** *** * * * consensus_4404#0 ATTC-CACTCGTTGATTATTCGATGGGAAAGTCGGTAGTCAGC 220 consensus_4404#1 GTTCGCATTCGTGCGG--------------------------- 165 *** ** **** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||