These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4413#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 348 fasta sequence [AGTGGATAGGACACACATTGAGGGAATCACCCAACTGCGTCACAAGACAAGCTCTCACATGGAATCCTGAAGGCCAAAGGAGAAGAGGAAGACCAAAGAACACATTACGCCGAGAAATGGAGACAGACATGAGAAGAATGAATAGAAGTTGGATAGAGCTAGAAAGGAAGGAAGACAGAGTGGGTTGGAGAATGCTGTTCGGCAGCCTATGCTTCATCAGGAGTAAAAGGCATAAGTAAGTAATTAATATATGAAGTTATTGACCTACAATTGGTCATAGTCAAGGAGATGCACTCACTCCTTATTCCTTAGCATATAATTCATTCACTGGTAACTATTCATTAAAAT] [+] EMBL CD149518 [AGTGGATAGGACACACATTGAGGGAATCACCCAACTGCGTCACAAGACAAGCTCTCACATGGAATCCTGAAGGCCAAAGGAGAAGAGGAAGACCAAAGAACACATTACGCCGAGAAATGGAGACAGACATGAGAAGAATGAATAGAAGTTGGATAGAGCTAGAAAGGAAGGAAGACAGAGTGGGTTGGAGAATGCTGTTCGGCAGCCTATGCTTCATCAGGAGTAAAAGGCATAAGTAAGTAATTAATATATGAAGTTATTGACCTACAATTGGTCATAGTCAAGGAGATGCACTCACTCCTTATTCCTTAGCATATAATTCATTCACTGGTAACTATTCATTAAAAT] consensusID : consensus_4413#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 342 fasta sequence [CAGGATTTTCGATACAAATGTCAAGACAGTTCTACTGTATGGGGCGGAAATATGGAGAACTACGAATGCCATCATCTAGAAGATACAAGTGTTTATTAACAGCTGTTTACGCAAGGTACTTCGGATCCGTTGGCCAGACACTATCAGCAGCAAGTTACTGTGAGAGACAACAAACCAGATTCCAGTAGAGGAAGAAATCATGAAGAAGCACTGGAAGTTGATAGGACACACATTGAGGAAACCACCCAACTGCGTCACAAGACAAGCCCTCACACGGAATCCTGAAGGCCAAGGGAGAAGAGGAAGACCAGAGAGAACATTACGCCGAGAAATGGAAACAGA] [+] EMBL CD089149 [CAGGATTTTCGATACAAATGTCAAGACAGTTCTACTGTATGGGGCGGAAATATGGAGAACTACGAATGCCATCATCTAGAAGATACAAGTGTTTATTAACAGCTGTTTACGCAAGGTACTTCGGATCCGTTGGCCAGACACTATCAGCAGCAAGTTACTGTGAGAGACAACAAACCAGATTCCAGTAGAGGAAGAAATCATGAAGAAGCACTGGAAGTTGATAGGACACACATTGAGGAAACCACCCAACTGCGTCACAAGACAAGCCCTCACACGGAATCCTGAAGGCCAAGGGAGAAGAGGAAGACCAGAGAGAACATTACGCCGAGAAATGGAAACAGA] [+] EMBL CD089022 [CAGGATTTTCGATACAAATGTCAAGACAGTTCTACTGTATGGGGCGAAAATATGGAGAACTACGAATGCCATCATCTAGAAGATACAAGTGTTTATTAACAGCTGTTTACGCAAGGTACTTCGGATCCGTTGGCCAGACACTATCAGCAGCAAGTTACTGTGAGAGACAACAAACCAGATTCCAGTAGAGGAAGAAATCATGAAGAAGCACTGGAAGTTGATAGGACACACATTGAGGAAACCACTCAACTGCGTCACAAGACAAGCCCTCACACGGAATCCTGAAGGCCAAGGGAGAAGAGGAAGACCAGAGAGAACATTACGCCGAGAAATGGAAACAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4413#0 -AGTGGATAGGACACACATTGAGGGAATCACCCAACTGCGTCACAAGACAAGCTCTCACA 59 consensus_4413#1 CAGGATTTTCGATACAAAT-GTCAAGACAGTTCTACTGTATGGGGCGGAAATATGGAGAA 59 ** * ** *** ** * * * **** * * ** * * consensus_4413#0 TG--GAATCCTGAAGGCCAAAGGAGAAGAGGAAGACCAAAGAACACATTACGCCGAGAAA 117 consensus_4413#1 CTACGAATGCCATCATCTAGAAGATACAAGTGTTTATTAACAGCTGTTTACGCAAGGTAC 119 **** * * * * ** * ** ** * * ****** * * consensus_4413#0 TGGAGACAGACATGAGAAGAATGAATAGAAGTTGGATAGAGCTAGAAAGGAAGGAAGACA 177 consensus_4413#1 TTCGGATCCGTTGGCCAGACACTATCAGCAGCAAGTTACTGT--GAGAGACAACAAACCA 177 * ** * * * * ** ** * ** * ** ** * ** ** consensus_4413#0 GAGTGGGTTGGAGAATGCTGTTCGGCAGCCTATGCTTCATCAGGAG-TAAAAGGCATAAG 236 consensus_4413#1 GATTCCAGTAGAGGAAGAAATCATGAAG---AAGCACTGGAAGTTGATAGGACACACATT 234 ** * * *** * * * * ** * ** ** * ** * ** * consensus_4413#0 TAAGTAATTAATATATGAAGTTATT-GACCTACAATTGGTCATAGTCAAGGAGATGCACT 295 consensus_4413#1 GAGGAAACCACCCAACTGCGTCACAAGACAAGCCCTCACACGGAATCCTGAAGGCCAAGG 294 * * ** * * ** * *** * * * * ** * ** * consensus_4413#0 CACTCCTTATTCCTTAGCATATAATTCATTCACTGGTAACTATTCATTAAAAT 348 consensus_4413#1 GAGAAGAGGAAGACCAGAGAGAACATTA--CGCCGAGAAATGGAAACAGA--- 342 * ** * * * * * * ** * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||