These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4414#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 377 fasta sequence [AGCACGGTACCCTGGCTTCCACATCATCTCGTGTGTCCGTGTTCGCTCCAGTCGAATTGGATTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGAAGCCGAGTCGGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACGCAGAAAGTGAAGTGGTAGAACAGGTTGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAG] [+] EMBL CD067722 [AGCACGGTACCCTGGCTTCCACATCATCTCGTGTGTCCGTGTTCGCTCCAGTCGAATTGGATTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGAAGCCGAGTCGGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACGCAGAAAGTGAAGTGGTAGAACAGGTTGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAG] consensusID : consensus_4414#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 181 fasta sequence [GCCCGGTACCCTGCCTTCACCGACTGC-C-GAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGTAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGACG] [+] EMBL CD168605 [GCCCGGTACCCTGCCTTCACCGACTGC C GAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGTAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGACG] [+] EMBL CD168590 [GCCCGGTACCCTGCAATCACCGACTGCTCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAGGC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4414#0 AGCACGGTACCCTGGCTTCCACATCATCT---CGTGTGTCCGTGTTCGCTCCAGTCGAAT 57 consensus_4414#1 -GCCCGGTACCCTGCCTTCACCGACTGCCGAACGTGTGTCTGTGTTCGCTCCAGTCGAAT 59 ** ********** **** * * * ******** ******************* consensus_4414#0 TGGATTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACGATTGGTTGAGC 117 consensus_4414#1 TGTAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACGATTGGTTGAGC 119 ** * ******************************************************* consensus_4414#0 GTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGA 177 consensus_4414#1 GTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGA 179 ************************************************************ consensus_4414#0 CGGAAGCCGAGTCGGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACG 237 consensus_4414#1 CG---------------------------------------------------------- 181 ** consensus_4414#0 CAGAAAGTGAAGTGGTAGAACAGGTTGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCG 297 consensus_4414#1 ------------------------------------------------------------ consensus_4414#0 AATTGGAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACGATTGGTTG 357 consensus_4414#1 ------------------------------------------------------------ consensus_4414#0 AGCGTGTCGGTGAGATGGAG 377 consensus_4414#1 -------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||