These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4419#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 703 fasta sequence [TATGTTAAAGGAATCTGAACGCAGTATGATGGGCCAGCGTTTTTATGGTTTGCCGGGCAGTATGACTCCACATCCTTCGAGTGGTTCAAGTGGGTATTTCCAGAATCGCAATTACCCTACCTCTATCAATTTTGTCTCTTTGAGCGAAACCGAAAATAAGCAGTCACCGTCTATTTCTTCGCCTTCACTCAGAACTCCTATCTCGCCATCAGCAAATGACAGAAGTGTTCATTCTGTTAACGTGTCGTCTTTGC-AAAGTGAAACTCAAGAGTTAACTAAACAACATAACACAGTTAGTATTCCTGTGAATCGTGAGCAACGGTCATTTGAGAAACAAAGACGTGACTTATTGACTGGCCTGGAACATGGGGGTGGTGCTCATCGTGGCAACTCAATCGCACCATACACGGAAGATTGGCCGAGTGCAGTGGACAACTGGATCGACTCCTCGTGGAAGAGATGGGATGACGACATGCGACGTTTGAGACGTGGAATGTTTGCACTATTACCATTGGATACTTTCTCCCATGGAATTTTGGAAAATCCATTCGCATTAATGCACCAAATGGATCGTCAAATCCAGGATATCCGAGAGAGAATGGGGTCATTGGATGTGCCGTCTACCGGTTCAGTGAACGACTTTCTGAAGGACGCCTACGAAGTAGGTGAGGATGGCAAGGTACATTTCAAGGTACGATTCGAT] [+] EMBL CD094546 [TATGTTAAAGGAATCTGAACGCAGTATGATGGGCCAGCGTTTTTATGGTTTGCCGGGCAGTATGACTCCACATCCTTCGAGTGGTTCAAGTGGGTATTTCCAGAATCGCAATTACCCTACCTCTATCAATTTTGTCTCTTTGAGCGAAACCGAAAATAAGCAGTCACCGTCTATTTCTTCGCCTTCACTCAGAACTCCTATCTCGCCATCAGCAAATGACAGAAGTGTTCATTCTGTTAACGTGTCGTCTTTGC AAAGTGAAACTCAAGAGTTAACTAAACAACATAACACAGTTAGTATTCCTGTGAATCGTGAGCAACGGTCATTTGAGAAACAAAGACGTGACTTATTGACTGGCCTGGAACATGGGGGTGGTGCTCATCGTGGCAACTCAATCGCACCATACACGGAAGATTGGCCGAGTGCAGTGGACAACTGGATCGACTCCTCGTGGAAGAGATGGGATGACGACATGCGACGTTTGAGACGTGGAATGTTTGCACTATTACCATTGGATACTTTCTCCCATGGAATTTTGGAAAATCCATTCGCATTAATGCACCAAATGGATCGTCAAATCCAGGATATCCGAGAGAGAATGGGGTCATTGGATGTGCCGTCT ] [-] EMBL CD094684 [ CAGCAAATGACAGAAGTGTTCATTCTGTTAACGTGTCATC TTGCAAAAGTGAAACTCAAGAGTTAACTAAACAACATAACACAGTTAGTATTCCTGTGAATCGTGAGCAACGGTCATTTGAGAAACAAAGACGTGACTTATTGACTGGCCTGGAACATGGGGGTGGTGCTCATCGTGGCAACTCAATCGCACCATACACGGAAGACTGGCCGAGTACAGTGGACAACTGGATCGACTCCTCGTGGAAGAGATGGGATGACGACATGCGACGTTTGAGACGTGGAATGTTTGCACTATTACCATTGGATACTTTCTCCCATGGAATTTCGGAAAATCCATTCGCATTAATGCACCAAATGGATCGTCAAATCCAGGATATCCGAGAGAGAATGGGGTCATTGGATGTGCCGTCTACCGGTTCAGTGAACGACTTTCTGAAGGACGCCTACGAAGTAGGTGAGGATGGCAAGGTACATTTCAAGGTACGATTCGAT] consensusID : consensus_4419#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 486 fasta sequence [CGTTCGCTCTGCTGCTTGGACTCCTCGTGGAAGAGATGGGATGACGACATGCGACGTTTGAGACGTGGAATGTTTGCACTATTACCATTGGATACTTTCTCCCATGGAATTTTGAGAAAATCCATTCGAATTAATGCACCAAATGGATCGTCAAATCCAAGATATCCGAGAGAGAATGGGGTCATTGGATGTGCCGGCTACCGGTTCAGTGAACGACTTTCTGATAGACGCCTACGAATTATGTGAGGATGGCAAGGTACATTTCGAGGTACGATTCGATGCTCAAGGTTTCTCTCCTCAGGACATCAATGCGACGTCGAGTGATAACCGTGTGACGGTACACGCAAAGAAGGAGACGACTACCGATGGCCCGAAGTGTACTCGGGAGTTCTGTCATATGGTGCAACTGCCGAAGAGTATTGATGATAGTCAACTGCAATGTCGCATGACTGATGTGTTCATGGACTGTCGTATGTGGATGATGGA] [+] EMBL CD149045 [CGTTCGCTCTGCTGCTTGGACTCCTCGTGGAAGAGATGGGATGACGACATGCGACGTTTGAGACGTGGAATGTTTGCACTATTACCATTGGATACTTTCTCCCATGGAATTTTGAGAAAATCCATTCGAATTAATGCACCAAATGGATCGTCAAATCCAAGATATCCGAGAGAGAATGGGGTCATTGGATGTGCCGGCTACCGGTTCAGTGAACGACTTTCTGATAGACGCCTACGAATTATGTGAGGATGGCAAGGTACATTTCGAGGTACGATTCGATGCTCAAGGTTTCTCTCCTCAGGACATCAATGCGACGTCGAGTGATAACCGTGTGACGGTACACGCAAAGAAGGAGACGACTACCGATGGCCCGAAGTGTACTCGGGAGTTCTGTCATATGGTGCAACTGCCGAAGAGTATTGATGATAGTCAACTGCAATGTCGCATGACTGATGTGTTCATGGACTGTCGTATGTGGATGATGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4419#0 TATGTTAAAGGAATCTGAACGCAGTATGATGGGCCAGCGTTTTTATGGTTTGCCGGGCAG 60 consensus_4419#1 ------------------------------------------------------------ consensus_4419#0 TATGACTCCACATCCTTCGAGTGGTTCAAGTGGGTATTTCCAGAATCGCAATTACCCTAC 120 consensus_4419#1 ------------------------------------------------------------ consensus_4419#0 CTCTATCAATTTTGTCTCTTTGAGCGAAACCGAAAATAAGCAGTCACCGTCTATTTCTTC 180 consensus_4419#1 ------------------------------------------------------------ consensus_4419#0 GCCTTCACTCAGAACTCCTATCTCGCCATCAGCAAATGACAGAAGTGTTCATTCTGTTAA 240 consensus_4419#1 ------------------------------------------------------------ consensus_4419#0 CGTGTCGTCTTTGCAAAGTGAAACTCAAGAGTTAACTAAACAACATAACACAGTTAGTAT 300 consensus_4419#1 ------------------------------------------------------------ consensus_4419#0 TCCTGTGAATCGTGAGCAACGGTCATTTGAGAAACAAAGACGTGACTTATTGACTGGCCT 360 consensus_4419#1 ------------------------------------------------------------ consensus_4419#0 GGAACATGGGGGTGGTGCTCATCGTGGCAACTCAATCGCACCATACACGGAAGATTGGCC 420 consensus_4419#1 ------------------------------------------------------------ consensus_4419#0 GAGTGCAGTGGACAACTGGATCGACTCCTCGTGGAAGAGATGGGATGACGACATGCGACG 480 consensus_4419#1 -CGTTCGCT---CTGCTGCTTGGACTCCTCGTGGAAGAGATGGGATGACGACATGCGACG 56 ** * * * *** * ************************************** consensus_4419#0 TTTGAGACGTGGAATGTTTGCACTATTACCATTGGATACTTTCTCCCATGGAATTTTG-G 539 consensus_4419#1 TTTGAGACGTGGAATGTTTGCACTATTACCATTGGATACTTTCTCCCATGGAATTTTGAG 116 ********************************************************** * consensus_4419#0 AAAATCCATTCGCATTAATGCACCAAATGGATCGTCAAATCCAGGATATCCGAGAGAGAA 599 consensus_4419#1 AAAATCCATTCGAATTAATGCACCAAATGGATCGTCAAATCCAAGATATCCGAGAGAGAA 176 ************ ****************************** **************** consensus_4419#0 TGGGGTCATTGGATGTGCCGTCTACCGGTTCAGTGAACGACTTTCTGAAGGACGCCTACG 659 consensus_4419#1 TGGGGTCATTGGATGTGCCGGCTACCGGTTCAGTGAACGACTTTCTGATAGACGCCTACG 236 ******************** *************************** ********** consensus_4419#0 AAGTAGGTGAGGATGGCAAGGTACATTTCAAGGTACGATTCGAT---------------- 703 consensus_4419#1 AATTATGTGAGGATGGCAAGGTACATTTCGAGGTACGATTCGATGCTCAAGGTTTCTCTC 296 ** ** *********************** ************** consensus_4419#0 ------------------------------------------------------------ consensus_4419#1 CTCAGGACATCAATGCGACGTCGAGTGATAACCGTGTGACGGTACACGCAAAGAAGGAGA 356 consensus_4419#0 ------------------------------------------------------------ consensus_4419#1 CGACTACCGATGGCCCGAAGTGTACTCGGGAGTTCTGTCATATGGTGCAACTGCCGAAGA 416 consensus_4419#0 ------------------------------------------------------------ consensus_4419#1 GTATTGATGATAGTCAACTGCAATGTCGCATGACTGATGTGTTCATGGACTGTCGTATGT 476 consensus_4419#0 ---------- consensus_4419#1 GGATGATGGA 486 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||