These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4420#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 463 fasta sequence [CCCTCAACTCATTCACTTCGTACATCGCCGACACCTCTTCCTTCCTCTCCAACACATCCACATTGGCACGCATAATGTCCAAATCACGTCGTTCTGCCTCCACAGTCTCCCTCAACTCATTCACTTCGTACATCGCCGACACCTCTTCCTTCCTCTCCAACACATCCGCATTGGCACGCATAATGTCCAAATCACGCCGTTCTGCCTCCACAGTCTCCCTCAACTCATTCACTTCGTACATCGCCGACACCTCTTCCTTCCTCTCCAACACATCCACATTGGCACGCATAATGTCCAAATCACGTCGTTCTGCCTCCACAGTCTCCCTCAACTCATTCACTTCGTACATCGCCGACACCTCTTCCTTCCTCTCCAACACATCCACATTGGCACGCATAATGTCCAAATCACGTCGTTCTGCCTCCACAGTCTCCCTCAACTGATTCACTTGGTACATCGGCGA] [+] EMBL CD167786 [CCCTCAACTCATTCACTTCGTACATCGCCGACACCTCTTCCTTCCTCTCCAACACATCCACATTGGCACGCATAATGTCCAAATCACGTCGTTCTGCCTCCACAGTCTCCCTCAACTCATTCACTTCGTACATCGCCGACACCTCTTCCTTCCTCTCCAACACATCCGCATTGGCACGCATAATGTCCAAATCACGCCGTTCTGCCTCCACAGTCTCCCTCAACTCATTCACTTCGTACATCGCCGACACCTCTTCCTTCCTCTCCAACACATCCACATTGGCACGCATAATGTCCAAATCACGTCGTTCTGCCTCCACAGTCTCCCTCAACTCATTCACTTCGTACATCGCCGACACCTCTTCCTTCCTCTCCAACACATCCACATTGGCACGCATAATGTCCAAATCACGTCGTTCTGCCTCCACAGTCTCCCTCAACTGATTCACTTGGTACATCGGCGA] consensusID : consensus_4420#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 407 fasta sequence [TGTCCAAATCACGTCGTTCTGCCTCCACAGTCTCCCTCAACTCATTCACTTCGTCTCGCAAATGACGCTTCTCTTCTCTCAGATCCGCAACTTCACTCTCCTTCACAGTCAACAAACGCCGAACATCCATCAACGAAGCATCACTCTCCTCAACCGATTTAGACAGCTTCACTATCTGTTCATAACAAGACGCCAACTCTTCACGCAGTTGACTAACCACATTCGGCTTATCTTCACACAAACTTGAACTCACTAGCTTCTCTCTCGTCATCTCCACTGCACTCATGGTCGACTGGTCTACGGTCGACGGATAGGTAAATCCTGATGTTAACAATGTTTCTGTGGACGAGGTAGGTTNTATTTCTTTATTATTTGTGGGTCTTTCATATTCTCTTTGTTCTGTGAGC] [+] EMBL CD087021 [TGTCCAAATCACGTCGTTCTGCCTCCACAGTCTCCCTCAACTCATTCACTTCGTCTCGCAAATGACGCTTCTCTTCTCTCAGATCCGCAACTTCACTCTCCTTCACAGTCAACAAACGCCGAACATCCATCAACGAAGCATCACTCTCCTCAACCGATTTAGACAGCTTCACTATCTGTTCATAACAAGACGCCAACTCTTCACGCAGTTGACTAACCACATTCGGCTTATCTTCACACAAACTTGAACTCACTAGCTTCTCTCTCGTCATCTCCACTGCACTCATGGTCGACTGGTCTACGGTCGACGGATAGGTAAATCCTGATGTTAACAATGTTTCTGTGGACGAGGTAGGTTNTATTTCTTTATTATTTGT ] [+] EMBL CD169913 [ CGCCGAACATCCATCAACGAAGCATCACTCTCCTCAACCGATTTAGACAGCTTCACTATCTGTTCATAACAGGACGCCAACTCTTCACGCAGTGGACTAACCACATTCGACTTATCTTCACACAAACTGGAACTCACTAGCTTCTCTCTGGTCATCTCCACTGCACTCATGGTCGACTGGTCTACGGCCGACGGATAGGTAAATCCTGATGTTAACAATGTTTCTGTGGACGAGGTAGGTTTTATTTCTTTATTATTGGTGGGTCTTTCATATTCTCTTTGTTCTGTGAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4420#0 CCCTCAACTCATTCACTTCGTACATCGCCGACACCTCTTCCTTCCTCTCCAACACATCCA 60 consensus_4420#1 ------------------------------------------------------------ consensus_4420#0 CATTGGCACGCATAATGTCCAAATCACGTCGTTCTGCCTCCACAGTCTCCCTCAACTCAT 120 consensus_4420#1 ---------------TGTCCAAATCACGTCGTTCTGCCTCCACAGTCTCCCTCAACTCAT 45 ********************************************* consensus_4420#0 TCACTTCGTACATCGCCGACACCTCTTCCTTCCTCTCCAA--CACATCCGCATTGGCACG 178 consensus_4420#1 TCACTTCGTC--TCGCAAATGACGCTTCTCTTCTCTCAGATCCGCAACTTCACTCTCCTT 103 ********* **** * * **** * ***** * * ** * ** * * consensus_4420#0 CATAATGTCCAAATCACGCCGTTCTGCCTCCACAGTCTCCCTCAACTCATTCACTTCGTA 238 consensus_4420#1 CACAGTCAACAAACGCCGAACATCCATCAACGAAGCATCACTCTCCTCAACCGATTTAGA 163 ** * * **** ** ** * * ** ** *** **** * ** * consensus_4420#0 CATCGCCGACACCTCTTCCTTCCTCTCCAACACATCCACATTGGCACGCATAATGTCCAA 298 consensus_4420#1 CAGCTTCACTATCTGTTCATAAC-----AAGACGCCAACTCTT-CACGCA-GTTGACTAA 216 ** * * * ** *** * * ** ** * ** * ****** ** * ** consensus_4420#0 ATCACGTCGTTCTGCCTCCACAGTCTCCCTCAACTCATTCACTTCGTACATCGCCGACAC 358 consensus_4420#1 CCACATTCGGCTTATCTTCACA-CAAACTTGAACTCACTAGCTTCTCTC-TCGTCATCTC 274 *** * ** **** * * ****** * **** * *** * * * consensus_4420#0 CTCTTCCTTCCTCTCCAACACATCCACATTGGCACGCATAATGTCCAAATCACGTCGTTC 418 consensus_4420#1 CACTGCACTCATGGTCGACTGGTCTACGGTCG-ACGGATAGG---TAAATCCTGATGTTA 330 * ** * ** * * ** ** ** * * *** *** ***** * *** consensus_4420#0 ----TGCCTCCACAGTCTCCCTCAACTGATTCACTTGGTACATCGGCGA----------- 463 consensus_4420#1 ACAATGTTTCTGTGGACGAGGTAGGTTNTATTTCTTTAT-TATTTGTGGGTCTTTCATAT 389 ** ** * * * * * *** * ** * * consensus_4420#0 ------------------ consensus_4420#1 TCTCTTTGTTCTGTGAGC 407 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||