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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4424#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 783 fasta sequence
[AACTAGAAAACATATCATCGAAGGATTTGTACCGGTGAGCTGGACATCAGCAAGCTTTAAAGTTACGTATTTAACAATGTTAATACAAATTAAGTGAAAGACAAGTACTTAGCACTTGGATTTATATGAGTAGATCAATCAGATGATTTGTTCTCAAAAGACTTTTTAAATAGTATACACATAATATATTGTTGATAATGTCTTATTCACTTACTCATAGCTAATGTCTAGTTACAACATTTAATTTTGAATACCCCATCACTTGTGGTATTTTTATTTGTCATTAAAAAAAATTATTTGGTTAGCATTTAGTAAACATGACAAACGTGTATCATATCTGATAACTATTGAATACACAAACTCAGGTAGACTAAATGAAGTTGATAAAATGAAACATACAATAATAGAAAATACAAAAACAAAACCTCATTTTATAGAAATAACAGTGAGTAGTTAGTTTATTTCAGTTTTATTGGATCTTGTTACAATTCATTAAGTCATATGCATGATTGGCATAAACACTAATTTAAAAAAAAAGGAGATCAAGAATTAAATGCGATTACGTGACAGTAGACTTCGTGGAACAATGTACAATGGTCAAAGTACATTAACATCGATCAATGATACTAAAAAAATCTATTANAATAAGAGGATTGAACCATGTGTCACAATAGGCTCAATGGCCAACTACTCTAATATTTAAGGGTTGCTATGATAACAATAAGCTGGGACTAGTCTGAGCCATGTTGGCAGATGCAGACTACCTGGTTGGGGTCCGCGTGA]
[+] EMBL CD122707 [AACTAGAAAACATATCATCGAAGGATTTGTACCGGTGAGCTGGACATCAGCAAGCTTTAAAGTTACGTATTTAACAATGTTAATACAAATTAAGTGAAAGACAAGTACTTAGCACTTGGATTTATATGAGTAGATCAATCAGATGATTTGTTCTCAAAAGACTTTTTAAATAGTATACACATAATATATTGTTGATAATGTCTTATTCACTTACTCATAGCTAATGTCTAGTTACAACATTTAATTTTGAATACCCCATCACTTGTGGTATTTTTATTTGTCATTAAAAAAAATTATTTGGTTAGCATTTAGTAAACATGACAAACGTGTATCATATCTGATAACTATTGAATACACAAACTCAGGTAGACTAAATGAAGTTGATAAAATGAAACATACAATAATAGAAAATACAAAAACAAAACCTCATTTTATAGAAATAACAGTGAGTAGTTAGTTTATTTCAGTTTTATTGGATCTTGTTACAATTCATTAAGTCATATGCATGATTGGCATAAACACTAATTTAAAAAAAAAGGAGATCAAGAATTAAATGCGATTACGTGACAGTAGACTTCGTGGAACAATGTACAATGGTCAAAGTACATTAACATCGATCAATGATACTAAAAAAATCTATTANAATA ]
[-] EMBL CD122855 [ ctCTCATGTAGAAAAAAAGGAGATCAAGAATTAAATGCGATTACGTGACAGTAGGCTTCGTGGAACAATGTACAATGGTCAAAGTACATTAACATCGACCAATGATACTAAAAAAATCTATTA AATAAGAGGATTGAACCATGTGTCACAATAGGCTCAATGGCCAACTACTCTAATATTTAAGGGTTGCTATGATAACAATAAGCTGGGACTAGTCTGAGCCATGTTGGCAGATGCAGACTACCTGGTTGGGGTCCGCGTGA]
consensusID : consensus_4424#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 298 fasta sequence
[CTTCTAACAACCAAAGCAGCACTCTTTATAGGTACATGGAACGTCCGGACAATGTGGGAGACAGGAAAAACCAGCCAAATAGCAATGGGAAATCGAGGGGAGATNNACAACTTGTGCATGTACTTTCGGNAANATCAGCGAAAATACCCATTGGNNACACANNAACCGGNNACAACANNAAGGCTAGGGCTACCAGAGAGTAGTTGGTGTTCTTCTCTCCTCCCGGCTCACCGAAGGGGAAAATGCTCCCACACTCAGGGAGTGGGGTGGTTTGCTTCTTAATTCTGGCCACAAAAAA]
[+] EMBL CD088479 [CTTCTAACAACCAAAGCAGCACTCTTTATAGGTACATGGAACGTCCGGACAATGTGGGAGACAGGAAAAACCAGCCAAATAGCAATGGGAAATCGAGGGGAGATNNACAACTTGTGCATGTACTTTCGGNAANATCAGCGAAAATACCCATTGGNNACACANNAACCGGNNACAACANNAAGGCTAGGGCTACCAGAGAGTAGTTGGTGTTCTTCTCTCCTCCCGGCTCACCGAAGGGGAAAATGCTCCCACACTCAGGGAGTGGGGTGGTTTGCTTCTTAATTCTGGCCACAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4424#0 AACTAGAAAACATATCATCGAAGGATTTGTACCGGTGAGCTGGACATCAGCAAGCTTTAA 60
consensus_4424#1 ------------------------------------------------------------
consensus_4424#0 AGTTACGTATTTAACAATGTTAATACAAATTAAGTGAAAGACAAGTACTTAGCACTTGGA 120
consensus_4424#1 ------------------------------------------------------------
consensus_4424#0 TTTATATGAGTAGATCAATCAGATGATTTGTTCTCAAAAGACTTTTTAAATAGTATACAC 180
consensus_4424#1 ------------------------------------------------------------
consensus_4424#0 ATAATATATTGTTGATAATGTCTTATTCACTTACTCATAGCTAATGTCTAGTTACAACAT 240
consensus_4424#1 ------------------------------------------------------------
consensus_4424#0 TTAATTTTGAATACCCCATCACTTGTGGTATTTTTATTTGTCATTAAAAAAAATTATTTG 300
consensus_4424#1 ------------------------------------------------------------
consensus_4424#0 GTTAGCATTTAGTAAACATGACAAACGTGTATCATATCTGATAACTATTGAATACACAAA 360
consensus_4424#1 ------------------------------------------------------------
consensus_4424#0 CTCAGGTAGACTAAATGAAGTTGATAAAATGAAACATACAATAATAGAAAATACAAAAAC 420
consensus_4424#1 ------------------------------------------------------------
consensus_4424#0 AAAACCTCATTTTATAGAAATAACAGTGAGTAGTTAGTTTATTTCAGTTTTATTGGATCT 480
consensus_4424#1 ----------CTTCTAACAACCAAAGC-AGCACTC--TTTAT---AGGTACATGGAACGT 44
** ** ** * ** ** * * ***** ** * ** * * *
consensus_4424#0 TGTTACAATTCATTAAGTCATATGCATGATTGGCATAAACACTAATTTAAAAA-AAAAGG 539
consensus_4424#1 CCGGACAAT---GTGGGAGACAGGAAAAACCAGC-CAAATAGCAATGGGAAATCGAGGGG 100
***** * * * * * * * ** *** * *** *** * **
consensus_4424#0 AGATCAAGAATTAAATGCGATTACGTGACAGTAGACTTCGTGGAACAATGTACAATGGTC 599
consensus_4424#1 AGATNNACAACTTG-TGCATGTACTTT-CGGNAANATCAGCGAA--AATACCCATTGGNN 156
**** * ** * *** *** * * * * * * * * *** ** ***
consensus_4424#0 AAAGTACATTAACATCGATCAATGATACTAAAAAAATCTATTANAATAAGAGGATTGAAC 659
consensus_4424#1 ACACANNAACCGGNNACAACANNAAGGCTAGGGCTACCAG--AGAGTAGTTGGTGTTCTT 214
* * * * ** * *** * * * * ** ** *
consensus_4424#0 CATGTGTCACAATAGGCTCAATGGCCAACTACTCTAATATTTAAGGGTTGCTATGATAAC 719
consensus_4424#1 CTCTCCTCCCGGCTCACCGAAGGGGAAAATGCTCCCACACTCAGGGAGTGGGGTGGT--T 272
* ** * * ** ** ** * *** * * * * ** ** ** *
consensus_4424#0 AATAAGCTGGGACTAGTCTGAGCCATGTTGGCAGATGCAGACTACCTGGTTGGGGTCCGC 779
consensus_4424#1 TGCTTCTTAATTCTGGCCACAAAAAA---------------------------------- 298
* ** * * * *
consensus_4424#0 GTGA 783
consensus_4424#1 ----
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||