These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4454#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 618 fasta sequence [CTCGAGGGCCAGAATTCGGCACGAGGTCTTAGCCTTTTACGCTAATAAACTTGGGTCTACTAAAGATAATGAAATAATAACTGCACGAGATGAATTCAGTCGTTTATTGCCGATTCTAGATAAGTTGGAACTCGTAATAAACTCTACATCACACTCGATGGGCAATTCGACTTTAAATCTTCTACAATGTATTAAAGTTACATTAGCCACACGTGGAGCTATTCCTTGTCATGATTCTTTTTCATCTACGCCTGTAAACAATTTGTATTTTACTGAATGTAATTTTGACAAAGTAGAAGCTGAAACCTATCAATCAAAATATCATCGAAAAATTATCGAAGAAGTTGCTGTCTCCAACCTCCAGGATGTACAACAATCTGCTTGCAACCAGCTAGAGGATCCAACTTTGAAAAAGATTTTCGAAGAATTGCATGATCCTTTGATTCCTGTTCAAGGTCATGCATTGATTGTGCTTAGCCGATTGGTTGGAATCCAGAGATTCATGTATTTGGGGCCATGAACAACTCATATTTGAAGTTTTAACTAAATATTTGTCACATACAGATAGTTATATTTATTTGAATGCGATTCGATGCCTATCAGCTATGGGCTGCATAT] [+] EMBL CD080572 [CTCGAGGGCCAGAATTCGGCACGAGGTCTTAGCCTTTTACGCTAATAAACTTGGGTCTACTAAAGATAATGAAATAATAACTGCACGAGATGAATTCAGTCGTTTATTGCCGATTCTAGATAAGTTGGAACTCGTAATAAACTCTACATCACACTCGATGGGCAATTCGACTTTAAATCTTCTACAATGTATTAAAGTTACATTAGCCACACGTGGAGCTATTCCTTGTCATGATTCTTTTTCATCTACGCCTGTAAACAATTTGTATTTTACTGAATGTAATTTTGACAAAGTAGAAGCTGAAACCTATCAATCAAAATATCATCGAAAAATTATCGAAGAAGTTGCTGTCTCCAACCTCCAGGATGTACAACAATCTGCTTGCAACCAGCTAGAGGATCCAACTTTGAAAAAGATTTTCGAAGAATTGCATGATCCTTTGATTCCTGTTCAAGGTCATGCATTGATTGTGCTTAGCCGATTGGTTGGAATCCAGAGATTCATGTATTTGGGGCCATGAACAACTCATATTTGAAGTTTTAACTAAATATTTGTCACATACAGATAGTTATATTTATTTGAATGCGATTCGATGCCTATCAGCTATGGGCTGCATAT] consensusID : consensus_4454#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 523 fasta sequence [AATTCGGCACGAGGCCACCTCCAGGATGTACAACAATCTGCTTGCAACCAGCTAGAGGATCCAACTTTGAAAAAGATTTTCGAAGAATTGCATGATCCTTTGATTCCTGTTCAAGGTCATGCATTGATTGTGCTTAGCCGATTGTTGGAATCCAGAGATTCATGTATTTGGGGCCATGAACAACTCATATTTGAAGTTTTAACTAAATATTTGTCACATACAGATAGTTATATTTATTTGAATGCGATTCGATGCCTATCAGCTATGGGCTGCATATTAACGGACAAAGTATTAAATCTACTATTAAATCAATTCACCAAGATCGTGCAGACTACCAATAAACCGGCAAATTCGATTGGTACCATTGTCACTAGTACTACTGGCGATTATGATATTGAATATAAATTGAAATTAGCTGAATCTATAATGCGTGTTTTGTCAAATTTAGGTGAGGTGGCACCAAAGTATCGAACAGAAGTGTTTAACTCGTTTGTTATGGGATCTAAGTCATCTGACGAGTTAA] [+] EMBL CD083714 [AATTCGGCACGAGGCCACCTCCAGGATGTACAACAATCTGCTTGCAACCAGCTAGAGGATCCAACTTTGAAAAAGATTTTCGAAGAATTGCATGATCCTTTGATTCCTGTTCAAGGTCATGCATTGATTGTGCTTAGCCGATTGTTGGAATCCAGAGATTCATGTATTTGGGGCCATGAACAACTCATATTTGAAGTTTTAACTAAATATTTGTCACATACAGATAGTTATATTTATTTGAATGCGATTCGATGCCTATCAGCTATGGGCTGCATATTAACGGACAAAGTATTAAATCTACTATTAAATCAATTCACCAAGATCGTGCAGACTACCAATAAACCGGCAAATTCGATTGGTACCATTGTCACTAGTACTACTGGCGATTATGATATTGAATATAAATTGAAATTAGCTGAATCTATAATGCGTGTTTTGTCAAATTTAGGTGAGGTGGCACCAAAGTATCGAACAGAAGTGTTTAACTCGTTTGTTATGGGATCTAAGTCATCTGACGAGTTAA] [+] EMBL CD146634 [ CAACAATCTGCTTGCAACCAGCTAGAGGATCCAACTTTGAAAAAGATTTTCGAAGAATTGCATGATCCTTTGATTCCTGTTCAAGGTCATGCATTGATTGTGCTTAGCCGATTGTTGGAATCCAGAGATTCATGTATTTGGGGCCATGAACAACTCATATTTGAAGTTTTAACTAAATATTTGTCACATACAGATAGTTATATTTATTTGAATGCGATTCGATGCCTATCAGCTATGGGCTGCATATTAACGGACAAAGTATTAAATCTACTATTAAATCAATTCACCAAGATCGTGCAGACTACCAATAAACCGGCAAATTCGATTGGTACCATTGTCACTAGTACTACTGGAGATTATGATATTGAATATAAATTGAAATTAGCTGAATCTATAATGCGTGTTTTGTC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4454#0 CTCGAGGGCCAGAATTCGGCACGAGGTCTTAGCCTTTTACGCTAATAAACTTGGGTCTAC 60 consensus_4454#1 ------------AATTCGGCACGAGGCC---ACCTCCAGGATGTACAACAATCTGCTTGC 45 ************** * *** * ** * * * * consensus_4454#0 TAAAGATAATGAAATAATAACTGCACGAGATGAATTCAGTCGTTTATTGCCGATTCTAGA 120 consensus_4454#1 AACCAGCTAGAGGATC-CAACTTTGAAAAAGATTTTCGAAGAATTGCA--TGATCCT--- 99 * * ** **** * * *** ** *** ** consensus_4454#0 TAAGTTGGAACTCGTAATAAACTCTACATCACACTCGATGGGCAATTCGACTTTAAATCT 180 consensus_4454#1 TTGATTCCTGTTCAAGGTCATGCATTGATTGTGCTTAGCCGATTGTTGGAATCCAGAGAT 159 * ** ** * * * ** ** * ** ** * * * * consensus_4454#0 TCTACAATGTATTAAAGTTACATTAGCCACACGTGGAGCTATTCCTTGTCATGATTCTTT 240 consensus_4454#1 TC----ATGTATTTGGGGC-CATGAACAACTCATATTTGAAGTTTTAACTA--AATATTT 212 ** ******* * *** * * ** * * * * * * * * *** consensus_4454#0 TTCATCTACGCCTGTAAACAATTTGTATTTTACTGAATGTAATTTTGACAAAGTAGAAGC 300 consensus_4454#1 GTCACATAC------AGATAGTT-ATATTTATTTGAATGCGATT----CGATGC-----C 256 *** *** * * * ** ***** ****** *** * * * * consensus_4454#0 TGAAACCTATCAATCAAAATATCATCGAAAAATTATCGAAGAAGTTGCTGTCTCCAACCT 360 consensus_4454#1 TATCAGCTATGGGCTGCATATTAACGGACAAAGTATTAAATCTACTATTAAATCAATTCA 316 * * **** * * * ** *** *** ** * * ** * * consensus_4454#0 CCAGGAT-GTACAACAATCTGCTTGCAACCAGCTAGAGGATCCAACTTTGAAAAAGATTT 419 consensus_4454#1 CCAAGATCGTGCAG------ACTACCAATAAACCGGCAAATTCGA--TTGGTACCATTGT 368 *** *** ** ** ** *** * * * ** * * *** * * * consensus_4454#0 TCGAAGAATTGCATGATCCTTTGATTCCTGTTCAAGGTCATGCATTGATTGTGCTTAGCC 479 consensus_4454#1 CACTAGTACTACTGGCGATTATGATATTGAATATAAATTG-AAATTAGCTGAATCTA--T 425 ** * * * * * **** * * * *** ** ** consensus_4454#0 GATTGGTTGGAATCCAGAGATTCATGTATTTGGGGCCATGAACAACTCATATTTGAAGTT 539 consensus_4454#1 AATGCGT--GTTTTGTCAAATTTAGGTGA--GGTGGCACCAAAGTATCGAACAGAAGTGT 481 ** ** * * * *** * ** ** * ** ** ** * * * consensus_4454#0 TTAACTAAATATTTGTCACATACAGATAGTTATATTTATTTGAATGCGATTCGATGCCTA 599 consensus_4454#1 TTAACTCGTTTGTTATGGGATCTAAGTCATC-TGACGAGTTAA----------------- 523 ****** * ** * ** * * * * * ** * consensus_4454#0 TCAGCTATGGGCTGCATAT 618 consensus_4454#1 ------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||