These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_446#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 308 fasta sequence [GAGATCATGACACGCGGGCGCACGGATTACCGTCTGTTCCGGTAAAGCCCTTTAAAGAACGGAGCTAACACGTCAAAAAACTCCCACAAAAAGGCCGTGCGTGACCGACCTCAAACAGTTGTCCCTCTGGCTCCGCGGTCACGCTCTCAAGTCGGTAAGACCAATATTAATCCAAATCTCTTCTCAGGTCTCTCAAGAAATACCCTTTGACGGTTTGGGCAGCCGGAAAGTGATATCAGCCCTCATACCCGTAACAACACACGAGACCAAGTTGGTCACATTCAAATCCTTCCTACACCTAATAACTC] [+] EMBL CD149765 [GAGATCATGACACGCGGGCGCACGGATTACCGTCTGTTCCGGTAAAGCCCTTTAAAGAACGGAGCTAACACGTCAAAAAACTCCCACAAAAAGGCCGTGCGTGACCGACCTCAAACAGTTGTCCCTCTGGCTCCGCGGTCACGCTCTCAAGTCGGTAAGACCAATATTAATCCAAATCTCTTCTCAGGTCTCTCAAGAAATACCCTTTGACGGTTTGGGCAGCCGGAAAGTGATATCAGCCCTCATACCCGTAACAACACACGAGACCAAGTTGGTCACATTCAAATCCTTCCTACACCTAATAACTC] consensusID : consensus_446#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 166 fasta sequence [TAACGTTCCGTGTACTTGAATCGTTTGCCCTTTCGGTGCGAGGTGATAAAAGGACGTGGGAAGGGTTAGTCTTGGAGATAAGAGAGCTATTAAGAGGTGTATGAAGGATTTGAAGTGACCAACTTGGTCTCGTGTGCTGTTACAGGTATGAAGGCTGATATCACTT] [+] EMBL CD066526 [TAACGTTCCGTGTACTTGAATCGTTTGCCCTTTCGGTGCGAGGTGATAAAAGGACGTGGGAAGGGTTAGTCTTGGAGATAAGAGAGCTATTAAGAGGTGTATGAAGGATTTGAAGTGACCAACTTGGTCTCGTGTGCTGTTACAGGTATGAAGGCTGATATCACTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_446#0 GAGATCATGACACGCGG-GCGCACGGATTACCGTCTGTTCCGGTA-AAGCCCTTTAAAGA 58 consensus_446#1 -------TAACGTTCCGTGTACTTGAATCGTTTGCCCTTTCGGTGCGAGGTGATAAAAGG 53 * ** * * * * * ** * ** **** ** * **** consensus_446#0 ACG-----GAGCTAACACGTCAAAAAACTCCCACAAAAAGGCCGTGCGTGACCGACCTCA 113 consensus_446#1 ACGTGGGAAGGGTTAGTCTTGGAGATAAGAGAGCTATTAAGAGGTGTATGAAGGATTTGA 113 *** * * * * * * * * * * * * *** *** ** * * consensus_446#0 AACAGTTGTCCCTCTGGCTCCGCGGTCACGCTCTCAAGTCGGTAAGACCAATATTAATCC 173 consensus_446#1 AGTGACCAACT---TGGTCTCGTG--TGCTGTTACAGGTATG-AAGGCTGATATCACTT- 166 * * *** ** * * * ** ** * *** * **** * * consensus_446#0 AAATCTCTTCTCAGGTCTCTCAAGAAATACCCTTTGACGGTTTGGGCAGCCGGAAAGTGA 233 consensus_446#1 ------------------------------------------------------------ consensus_446#0 TATCAGCCCTCATACCCGTAACAACACACGAGACCAAGTTGGTCACATTCAAATCCTTCC 293 consensus_446#1 ------------------------------------------------------------ consensus_446#0 TACACCTAATAACTC 308 consensus_446#1 --------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||