cluster # 4470

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Schistosoma mansoni
cluster # 4470 cluster # 4470 Sequences # 3 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4470#0 length = 398 sequences # 1

consensus_4470#1 length = 309 sequences # 1
consensus_4470#2 length = 290 sequences # 1

consensusID : consensus_4470#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 398
fasta sequence

                              [CGTGATTAAAGTTCGTAAGCAGTTTGTTTCTTGACTCCACACCATATTGTAATAAAATGTCACGCTTCCAACCTTACCTAACTGAAGCTCAAGAGAATGACCTACGCCGAATTGCTCAAGCTATTTGTGCTCCTGGCAAAGGGATTCTAGCAGCTGACGAAAGCACAGGTATTTACGCCCTAATTTTCATTTAGTTTTGTTTCAAAAGCCACAATGGGCAAAAGACTTCAACAGATCGGCGTTGAAAATAACGAAGAAAATCGTCGTCTGTACCGCCAGCTACTTTTTAGTGCTGATCACAAGCTGGCCGAAAATATCTCTGGAGTAATATTATTCGAAGAGACACTTCATCAAAAGTCAGACGATGGAAAGACTCTTCCAACTCTACTAGCTGAACG]

[+] EMBL CD189387             [CGTGATTAAAGTTCGTAAGCAGTTTGTTTCTTGACTCCACACCATATTGTAATAAAATGTCACGCTTCCAACCTTACCTAACTGAAGCTCAAGAGAATGACCTACGCCGAATTGCTCAAGCTATTTGTGCTCCTGGCAAAGGGATTCTAGCAGCTGACGAAAGCACAGGTATTTACGCCCTAATTTTCATTTAGTTTTGTTTCAAAAGCCACAATGGGCAAAAGACTTCAACAGATCGGCGTTGAAAATAACGAAGAAAATCGTCGTCTGTACCGCCAGCTACTTTTTAGTGCTGATCACAAGCTGGCCGAAAATATCTCTGGAGTAATATTATTCGAAGAGACACTTCATCAAAAGTCAGACGATGGAAAGACTCTTCCAACTCTACTAGCTGAACG]




>consensus_4470#0
CGTGATTAAAGTTCGTAAGCAGTTTGTTTCTTGACTCCACACCATATTGTAATAAAATGT
CACGCTTCCAACCTTACCTAACTGAAGCTCAAGAGAATGACCTACGCCGAATTGCTCAAG
CTATTTGTGCTCCTGGCAAAGGGATTCTAGCAGCTGACGAAAGCACAGGTATTTACGCCC
TAATTTTCATTTAGTTTTGTTTCAAAAGCCACAATGGGCAAAAGACTTCAACAGATCGGC
GTTGAAAATAACGAAGAAAATCGTCGTCTGTACCGCCAGCTACTTTTTAGTGCTGATCAC
AAGCTGGCCGAAAATATCTCTGGAGTAATATTATTCGAAGAGACACTTCATCAAAAGTCA
GACGATGGAAAGACTCTTCCAACTCTACTAGCTGAACG

consensusID : consensus_4470#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 309
fasta sequence

                              [CGGGCTGGGGGCTGGTTTCTTTGCTGCTTTGTGTGCTTCGGTGCGCGTTGTGGTGAGGTTACTGGACTCTGACCCGGGTCGATCGTGGGCGGTTTCAGCTGTTAGTGTCGTGCAGCTAGCAACGCGCGAGGACATGTTCCACGTTGCGTCAAGCGGCTGTACTTCCATGGTCTGGCGCGCGACGGCTAACTCATAACTGGCACGGACCTGGGGAATCCGACTGTCTAATTAAAACAAAGCATTGCGATGTCCACTGATTGGTTTTGACGCAATGTGATTTCTGCCCAGCCCGGCCCGGNCNTTTNCTGC]

[+] EMBL CD087625             [CGGGCTGGGGGCTGGTTTCTTTGCTGCTTTGTGTGCTTCGGTGCGCGTTGTGGTGAGGTTACTGGACTCTGACCCGGGTCGATCGTGGGCGGTTTCAGCTGTTAGTGTCGTGCAGCTAGCAACGCGCGAGGACATGTTCCACGTTGCGTCAAGCGGCTGTACTTCCATGGTCTGGCGCGCGACGGCTAACTCATAACTGGCACGGACCTGGGGAATCCGACTGTCTAATTAAAACAAAGCATTGCGATGTCCACTGATTGGTTTTGACGCAATGTGATTTCTGCCCAGCCCGGCCCGGNCNTTTNCTGC]




>consensus_4470#1
CGGGCTGGGGGCTGGTTTCTTTGCTGCTTTGTGTGCTTCGGTGCGCGTTGTGGTGAGGTT
ACTGGACTCTGACCCGGGTCGATCGTGGGCGGTTTCAGCTGTTAGTGTCGTGCAGCTAGC
AACGCGCGAGGACATGTTCCACGTTGCGTCAAGCGGCTGTACTTCCATGGTCTGGCGCGC
GACGGCTAACTCATAACTGGCACGGACCTGGGGAATCCGACTGTCTAATTAAAACAAAGC
ATTGCGATGTCCACTGATTGGTTTTGACGCAATGTGATTTCTGCCCAGCCCGGCCCGGNC
NTTTNCTGC

consensusID : consensus_4470#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 290
fasta sequence

                              [CTTTGCTGCTTTGTGTGCTTCGGTGCGCGTTGTGGTGAGGAAACTGGACTCTGACCCGGGTCGATCGTGGGCGGTTTCAGCTGTTAGTGTCGTGCAGCTAGCAACGCGCGAGGACATGTTCCACGTTGCGTCAAGCGGCTGTACTTCCATGGTCTGGCGCGCGACGGCTAACTCATAACTGGCACGGACCAGGGGAATCCGACTGTCTAATTAAAACAAAGCATTGCGATGTCCACTGATTGGTTTTGACGCAATGTGATTTCTGCCCAGCCCGGTCTGGCCTCACACTT]

[+] EMBL CD071558             [CTTTGCTGCTTTGTGTGCTTCGGTGCGCGTTGTGGTGAGGAAACTGGACTCTGACCCGGGTCGATCGTGGGCGGTTTCAGCTGTTAGTGTCGTGCAGCTAGCAACGCGCGAGGACATGTTCCACGTTGCGTCAAGCGGCTGTACTTCCATGGTCTGGCGCGCGACGGCTAACTCATAACTGGCACGGACCAGGGGAATCCGACTGTCTAATTAAAACAAAGCATTGCGATGTCCACTGATTGGTTTTGACGCAATGTGATTTCTGCCCAGCCCGGTCTGGCCTCACACTT]




>consensus_4470#2
CTTTGCTGCTTTGTGTGCTTCGGTGCGCGTTGTGGTGAGGAAACTGGACTCTGACCCGGG
TCGATCGTGGGCGGTTTCAGCTGTTAGTGTCGTGCAGCTAGCAACGCGCGAGGACATGTT
CCACGTTGCGTCAAGCGGCTGTACTTCCATGGTCTGGCGCGCGACGGCTAACTCATAACT
GGCACGGACCAGGGGAATCCGACTGTCTAATTAAAACAAAGCATTGCGATGTCCACTGAT
TGGTTTTGACGCAATGTGATTTCTGCCCAGCCCGGTCTGGCCTCACACTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4470#1      CGGGCTGGGGGCTGGTTTCTTTGCTGCTTTGTGTGCTTCGGTGCGCGTTGTGGTGAGGTT 60
consensus_4470#2      ------------------CTTTGCTGCTTTGTGTGCTTCGGTGCGCGTTGTGGTGAGGAA 42
consensus_4470#0      CGTGATTAAAGTTCGTAAGCAGTTTGTTTCTTG-ACTCCACACCATATTGTAATAAAATG 59
                                              ** **  **  ** *    *   ****  * *    

consensus_4470#1      ACTGGACTCTGACCCGGGTCGATCGTGGGCGGTTTCAGCTGTTAGTGTCG---TGC---A 114
consensus_4470#2      ACTGGACTCTGACCCGGGTCGATCGTGGGCGGTTTCAGCTGTTAGTGTCG---TGC---A 96
consensus_4470#0      TCACGCTTCCAACCTTACCTAACTGAAGCTCAAGAGAATGACCTACGCCGAATTGCTCAA 119
                       *  *  **  ***       *  *  *        *         * **   ***   *

consensus_4470#1      GCTAGCAACGC-----GCGAGGACATGTTCCACGTTGCGTCAAGCGGCTGTACTT---CC 166
consensus_4470#2      GCTAGCAACGC-----GCGAGGACATGTTCCACGTTGCGTCAAGCGGCTGTACTT---CC 148
consensus_4470#0      GCTATTTGTGCTCCTGGCAAAGGGATTCTAGCAGCTGACGAAAGCACAGGTATTTACGCC 179
                      ****     **     ** * *  **  *    * **    ****    *** **   **

consensus_4470#1      ATGGTCT--GGCGCGCGACGGCT---AACTCATAACTGGCACG-GACCTGGGGAATCCGA 220
consensus_4470#2      ATGGTCT--GGCGCGCGACGGCT---AACTCATAACTGGCACG-GACCAGGGGAATCCGA 202
consensus_4470#0      CTAATTTTCATTTAGTTTTGTTTCAAAAGCCACAATGGGCAAAAGACTTCAACAGATCGG 239
                       *  * *       *    *  *   **  ** **  ****   ***      *   ** 

consensus_4470#1      CTGTCTAATTAAAACAAAGCATTGCGATGTCCACTGATTGGTTTTGACGCAATG-TGATT 279
consensus_4470#2      CTGTCTAATTAAAACAAAGCATTGCGATGTCCACTGATTGGTTTTGACGCAATG-TGATT 261
consensus_4470#0      CGTTGAAAATAACGAAGAAAATCGTCGTCTGTACCG-CCAGCTACTTTTTAGTGCTGATC 298
                      *  *  ** ***   * *  ** *   * *  ** *    * *       * ** **** 

consensus_4470#1      TCTGCCCAGCCCGGCCCGGNCNTTTNCTGC------------------------------ 309
consensus_4470#2      TCTGCCCAGCCCGGTCTGGCCTCACACTT------------------------------- 290
consensus_4470#0      ACAAGCTGGCCGAAAATATCTCTGGAGTAATATTATTCGAAGAGACACTTCATCAAAAGT 358
                       *   *  ***                *                                

consensus_4470#1      ----------------------------------------
consensus_4470#2      ----------------------------------------
consensus_4470#0      CAGACGATGGAAAGACTCTTCCAACTCTACTAGCTGAACG 398