These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4476#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 112 fasta sequence [CGGTACCCCGNATGTCGC-AATAGGTAGGTGAGTGAAACATTGGTGAATATTATTGGGTGAAGAACCTCTGCGGTTACCGTCACCACAATAATTGGGTGAAATACCACATTTT] [+] EMBL CD127078 [CGGTACCCCGNATGTCGC AATAGGTAGGTGAGTGAAACATTGGTGAATATTATTGGGTGAAGAACCTCTGCGGTTACCGTCACCACAATAATTGGGTGAAATACCACATTTT] [+] EMBL CD127541 [ ccaCCGNATGT GCAAATA GTAGGTGAGTGAAACATTGG GAATATTATTGGGTGAAGAACCTCTGCGGTTACCGTCACCACAATAATTGGGTGAAATACCACATTTT] consensusID : consensus_4476#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 106 fasta sequence [ACCAGAGGAAGGTGGAGTGAAACATTGGGAATATTATTGGTGAAGAACTCTGCGGTTACCTGTCACACAATAATTGGGTGAAATACCACATTTTTCATCCAATACA] [+] EMBL CD126660 [ACCAGAGGAAGGTGGAGTGAAACATTGGGAATATTATTGGTGAAGAACTCTGCGGTTACCTGTCACACAATAATTGGGTGAAATACCACATTTTTCATCCAATACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4476#0 CGGTACCCCGNATGTCGCAATAGGTAGGTG-AGTGAAACATTGGTGAATATTATTGGGTG 59 consensus_4476#1 ----------------ACCAGAGGAAGGTGGAGTGAAACATTGG-GAATATTATTGG-TG 42 * * *** ***** ************* ************ ** consensus_4476#0 AAGAACCTCTGCGGTTACCGTCACCACAATAATTGGGTGAAATACCACATTTT------- 112 consensus_4476#1 AAGAAC-TCTGCGGTTACCTGTCACACAATAATTGGGTGAAATACCACATTTTTCATCCA 101 ****** ************ ***************************** consensus_4476#0 ----- consensus_4476#1 ATACA 106 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||