These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4484#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 527 fasta sequence [ATATGGTTGTGTCAAAAGAATATTCTATAAATATTCACTTAAACGATACCAAAATAATAATAATTGTAAAATAAAAACATGAAAAACCAAATTTTCAAGAATTTGTGTTTTTGGTATTATTGAGTTCTTTGAACTAGATGTAGTAGTAAGTACTGATGATATTTACCAGAGCGAAAGCGGAACTTTTGTAATTATGCCATCTAGTACGGACAACTCAGCAACGTTAAAAGTCTCCACTTGAACTTCAAATATTTTCCATTATCCCATAATTTGATATGAGCATGCACCAATCGAATTACACATGACGGAGCAGCTTTGGAGGATGTGAAAACCTTTACATATCTGGGCAGCATCATCGATGAATACGGTGGATCAGATGCAGATGTGAGGGCGAAGATCGGCAAAGCAAGAGCAGCATATTCATAACTAAAGAACATCTGGGACTCAAAACAACTTTCAACCAACCCCAAGATCAGAATTTTCAATACAAATGTCAAGACAATTCTACTGTATGGGGCGGAGACGTG] [+] EMBL CD185137 [ATATGGTTGTGTCAAAAGAATATTCTATAAATATTCACTTAAACGATACCAAAATAATAATAATTGTAAAATAAAAACATGAAAAACCAAATTTTCAAGAATTTGTGTTTTTGGTATTATTGAGTTCTTTGAACTAGATGTAGTAGTAAGTACTGATGATATTTACCAGAGCGAAAGCGGAACTTTTGTAATTATGCCATCTAGTACGGACAACTCAGCAACGTTAAAAGTCTCCACTTGAACTTCAAATATTTTCCATTATCCCATAATTTGATATGAGCATGCACCAATCGAATTACACATGACGGAGCAGCTTTGGAGGATGTGAAAACCTTTACATATCTGGGCAGCATCATCGATGAATACGGTGGATCAGATGCAGATGTGAGGGCGAAGATCGGCAAAGCAAGAGCAGCATATTCATAACTAAAGAACATCTGGGACTCAAAACAACTTTCAACCAACCCCAAGATCAGAATTTTCAATACAAATGTCAAGACAATTCTACTGTATGGGGCGGAGACGTG] [+] EMBL CD185244 [ATATGGTTGTGTCAAAAGAATATTCTATAAATATTCACTTAAACGATACCAAAATAATAATAATTGTAAAATAAAAACATGAAAAACCAAATTTTCAAGAATTTGTGTTTTTGGTATTATTGAGTTCTTTGAACTAGATGTAGTAGTAAGTACTGATGATATTTACCAGAGCGAAAGCGGAACTTTTGTAATTATGCCATCTAGTACGGACAACTCAGCAACGTTAAAAGTCTCCACTTGAACTTCAAATATTTTCCATTATCCCATAATTTGATATGAGCATGCACCAATCGAATTACACATGACGGAGCAGCTTTGGAGGATGTGAAAACCTTTACATATCTGGGCAGCATCATCGATGAATACGGTGGATCAGATGCAGATGTGAGGGCGAAGATCGGCAAAGCAAGAGCAGCATATTCATAACTAAAGAACATCTGGGACTCAAAACAACTTTCAACCAACCCCAAGATCAGAATTTTCAATACAAATGTCAAGACA ] consensusID : consensus_4484#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 451 fasta sequence [TTACTTTGGTGAGTACAATAATTTAAATATTCTTTAAACAGCTGAGCGGGTCAGCTCATTTGGTTGTGACTGGCATCGCCAATGCCTAAAGTGCAGCAGATGTAATAAAACCATGCTTCCTGGTTGCGGCTTAGAAGATCTCATATGAGGCTTGCCTTGTGACGCAGTTGGGTAATTTCCTCCATGTGTGTCCTATCCACTTCCAGCGCTTCTTCCTCCTCTGGAATCTGGTTTGTTCTCTCCCACAGTAAGTTGTTGCCAATTGTGTCTGGCCAACGGATCCGAAGTATTTTGCGTAGACAACTGTTAATAAACACTTGTATCTTCTGGATGATAACTTTCGCACTTCTCCAGGTTTCCACCTCATACAGTAGAACTGTCTAGACATTTGTATTGAAAATTCTGATCTTGGTGTTGGTTGAAAGTTGTTTTGAGTTCCAAATGTTCTTCA] [+] EMBL CD170252 [TTACTTTGGTGAGTACAATAATTTAAATATTCTTTAAACAGCTGAGCGGGTCAGCTCATTTGGTTGTGACTGGCATCGCCAATGCCTAAAGTGCAGCAGATGTAATAAAACCATGCTTCCTGGTTGCGGCTTAGAAGATCTCATATGAGGCTTGCCTTGTGACGCAGTTGGGTAATTTCCTCCATGTGTGTCCTATCCACTTCCAGCGCTTCTTCCTCCTCTGGAATCTGGTTTGTTCTCTCCCACAGTAAGTTGTTGCCAATTGTGTCTGGCCAACGGATCCGAAGTATTTTGCGTAGACAACTGTTAATAAACACTTGTATCTTCTGGATGATAACTTTCGCACTTCTCCAGGTTTCCACCTCATACAGTAGAACTGTCTAGACATTTGTATTGAAAATTCTGATCTTGGTGTTGGTTGAAAGTTGTTTTGAGTTCCAAATGTTCTTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4484#0 ATATGGTTGTGTCAAAAGAATATTCTATAAATATTCACTTAAACGA-TACCAAAATAATA 59 consensus_4484#1 ----------------------------------TTACTTTGGTGAGTACAATAATTTAA 26 * **** ** *** * *** * consensus_4484#0 ATAATTGTAAAATAAAAACATGAAAAACCAAATTTTCAAGAATTTGTGTTTTTGGTATTA 119 consensus_4484#1 ATATTCTTTAAACAGCTGAGCGGGTCAGCTCATTT------GGTTGTGAC--TGGCATCG 78 *** * * *** * * * * **** ***** *** ** consensus_4484#0 TTGAGTTCTTTGAACTAGATGTAGTAGTAAGTACTGATGATATTTACCAGAGCGAAAGCG 179 consensus_4484#1 CCAATGCCTAAAGTGCAGCAGATGTAATAA--AACCATGCTTCCTGGTTGCGGCTTAGAA 136 * ** ** * *** *** * *** * * * * ** consensus_4484#0 GAACTTTTGTAAT-TATGCCATCTAGTACGGACAACTCAGCAACGTTAAAAGTCTCCACT 238 consensus_4484#1 GATCTCATATGAGGCTTGCCTTGTGACGCAGTTGGGTAATTTCCTCCATGTGTGTCC-TA 195 ** ** * * * **** * * * * * * * * ** *** consensus_4484#0 TGAACTTCAAATATTTTCCATTATCCCATAATTTGATATGAGCATGCACCAATCGAATTA 298 consensus_4484#1 TCCACTTCCAGCGCTTCTTCCTCCTCTGGAATCTGGTTTGTTCTCTCCCACAGTAAGTTG 255 * ***** * ** * * *** ** * ** * * * * * ** consensus_4484#0 CACATGACGGAGCAGCTTTGGAGGATGTGAAAACCTTTACATATCTGGGCAGCATCATCG 358 consensus_4484#1 TTGCCAATTGTGTCTGGCCAACGGATCCGAAGTATTTTGCGTAGACAACTGTTAATAAAC 315 * * * **** *** *** * ** * * consensus_4484#0 A--TGAATACGGTGGATCAGA-----TGCAGATGTGAGGGCGAAGATCGGCAAAGCAAGA 411 consensus_4484#1 ACTTGTATCTTCTGGATGATAACTTTCGCACTTCTCCAGGTTTCCACCTCATACAGTAGA 375 * ** ** ***** * * *** * * ** * * * *** consensus_4484#0 GCAGCATATTCATAACTAAAGAACATCTGGGACTCAAAACAACTTTCAACCAACCCCAAG 471 consensus_4484#1 ACTGTCTAGACATTTGTATTGAAAATTCTGATCTTGGTGTTGGTTGAAAGTTGTTTTGAG 435 * * ** *** ** *** ** * ** ** ** ** consensus_4484#0 ATCAGAATTTTCAATACAAATGTCAAGACAATTCTACTGTATGGGGCGGAGACGTG 527 consensus_4484#1 TTCCAAATGTTCTTCA---------------------------------------- 451 ** *** *** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||