cluster # 4487

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Schistosoma mansoni
cluster # 4487 cluster # 4487 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4487#0 length = 646 sequences # 2

consensus_4487#1 length = 194 sequences # 1

consensusID : consensus_4487#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 646
fasta sequence

                              [GTAAGAAGCAGAGCAAATTTCTTTTTCTAGAAAAAGACAATAAATAAATAATCCAAATGTTTTACAAGAA-AACAAAACAGAACACATAAATAATGTAGAAAAATAAATGATGCATTGGATACTACTAGATGTTGCTTTAGAAGTACAGCTGATATAATCATTAAAACGTAGTTTCTTAAATACACAAAAGTTGGTTTAAAAGTAACGTTTTTTTGCTACAAAAAAATACAGAAGTCGAAATACGACAAGTTATGAAAGACATGGGCAAATGAAAAAAAATAAGTTAAGGCGTGGCAAATAACATCCTCTTCGACTAACACGCACAGGCGCTGACATCAACACACGAAGTACATCGTTCAACTTACCGCATAAAAACAGTAATTATGACAGAATTGGTTTAAACAGCAAAAATAAAACAGCTGTTGAATATGAAGAAGAAAAAACAAACTGATTTTTATTCGAATTTGTAGATGTAAGTGAAGTGTAGAATTAATGATGGATGATAATGATAAAGTTGTGTATATAAAAGAGAACAAGCTGTGTAAATTGTAAAACTAAAAAAAGAATATTATAAATTTGATAACAACCTCAAAATTATTACATTTCATGATATTTATATAGTTTGACAAGAGAAGTATTATTCCAA]

[+] EMBL CD075650             [GTAAGAAGCAGAGCAAATTTCTTTTTCTAGAAAAAGACAATAAATAAATAATCCAAATGTTTTACAAGAA AACAAAACAGAACACATAAATAATGTAGAAAAATAAATGATGCATTGGATACTACTAGATGTTGCTTTAGAAGTACAGCTGATATAATCATTAAAACGTAGTTTCTTAAATACACAAAAGTTGGTTTAAAAGTAACGTTTTTTTGCTACAAAAAAATACAGAAGTCGAAATACGACAAGTTATGAAAGACATGGGCAAATGAAAAAAAATAAGTTAAGGCGTGGCAAATAACATCCTCTTCGACTAACACGCACAGGCGCTGACATCAACACACGAAGTACATCGTTCAACTTACCGCATAAAAACAGTAATTATGACAGAATTGGTTTAAACAGCAAAAATAAAACAGCTGTTGAATATGAAGAAGAAAAAACAAACTGATTTTTATTCGAATTTGTAGATGTAAGTGAAGTGTAGAATTAATGATGGATGATAATGATAAAGTTGTGTATATAAAAGAGAACAAGCTGTGTAAATTGTAAAACTAAAAAAAGAATATTATAAATTTGATAACAACCTCAAAATTATTACATTTCATGATATTTATATAGTTTGACAAGAGAAGTATTATTCCAA]
[+] EMBL AA999476             [                                                    CCAAATGTTTTACAAGAANAACAAAACAGAACACATAAATAATGTAGAAAAATAAATGATGCATTGGATACTACTAGATGTTGCTTTAGAAGTACAGCTGATATAATCATTAAAACGTAGTTTCTTAAATACACAAAAGTTGGTTTAAAAGTAACGTTTTTTTGCTACAAAAAAATACAGAAGTCGAAATACGACAAGTTATGAAAGACATGGGCAAATGAAAAAAAATAAGTTAAGGCGTGGCAAATAACATCCTCTTCGACTAACACGCACAGGCGCTGACATCAACACACGGAGTACATCGGTCAACTTACCGGATAAAAACCGTAATTATGACAGAA                                                                                                                                                                                                                                                              ]




>consensus_4487#0
GTAAGAAGCAGAGCAAATTTCTTTTTCTAGAAAAAGACAATAAATAAATAATCCAAATGT
TTTACAAGAAAACAAAACAGAACACATAAATAATGTAGAAAAATAAATGATGCATTGGAT
ACTACTAGATGTTGCTTTAGAAGTACAGCTGATATAATCATTAAAACGTAGTTTCTTAAA
TACACAAAAGTTGGTTTAAAAGTAACGTTTTTTTGCTACAAAAAAATACAGAAGTCGAAA
TACGACAAGTTATGAAAGACATGGGCAAATGAAAAAAAATAAGTTAAGGCGTGGCAAATA
ACATCCTCTTCGACTAACACGCACAGGCGCTGACATCAACACACGAAGTACATCGTTCAA
CTTACCGCATAAAAACAGTAATTATGACAGAATTGGTTTAAACAGCAAAAATAAAACAGC
TGTTGAATATGAAGAAGAAAAAACAAACTGATTTTTATTCGAATTTGTAGATGTAAGTGA
AGTGTAGAATTAATGATGGATGATAATGATAAAGTTGTGTATATAAAAGAGAACAAGCTG
TGTAAATTGTAAAACTAAAAAAAGAATATTATAAATTTGATAACAACCTCAAAATTATTA
CATTTCATGATATTTATATAGTTTGACAAGAGAAGTATTATTCCAA

consensusID : consensus_4487#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 194
fasta sequence

                              [TAAAACAAGTAATTATGACAGAATTGGTTTAAACAGCAAAAATAAAACAGCTGTTGAATATGAAGAAGAAAAAACAAACTGATTTTTATTCGAATTTGTAGATGTAAGTGAAGTGTAGAATTAATGATGGATGATAATGATAAAGTTGTGTATATAAAAGAGAACAAGCTGTGTAAATTGCTCGTGACGAATTC]

[-] EMBL CD077639             [TAAAACAAGTAATTATGACAGAATTGGTTTAAACAGCAAAAATAAAACAGCTGTTGAATATGAAGAAGAAAAAACAAACTGATTTTTATTCGAATTTGTAGATGTAAGTGAAGTGTAGAATTAATGATGGATGATAATGATAAAGTTGTGTATATAAAAGAGAACAAGCTGTGTAAATTGCTCGTGACGAATTC]




>consensus_4487#1
TAAAACAAGTAATTATGACAGAATTGGTTTAAACAGCAAAAATAAAACAGCTGTTGAATA
TGAAGAAGAAAAAACAAACTGATTTTTATTCGAATTTGTAGATGTAAGTGAAGTGTAGAA
TTAATGATGGATGATAATGATAAAGTTGTGTATATAAAAGAGAACAAGCTGTGTAAATTG
CTCGTGACGAATTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4487#0      GTAAGAAGCAGAGCAAATTTCTTTTTCTAGAAAAAGACAATAAATAAATAATCCAAATGT 60
consensus_4487#1      ------------------------------------------------------------
                                                                                  

consensus_4487#0      TTTACAAGAAAACAAAACAGAACACATAAATAATGTAGAAAAATAAATGATGCATTGGAT 120
consensus_4487#1      ------------------------------------------------------------
                                                                                  

consensus_4487#0      ACTACTAGATGTTGCTTTAGAAGTACAGCTGATATAATCATTAAAACGTAGTTTCTTAAA 180
consensus_4487#1      ------------------------------------------------------------
                                                                                  

consensus_4487#0      TACACAAAAGTTGGTTTAAAAGTAACGTTTTTTTGCTACAAAAAAATACAGAAGTCGAAA 240
consensus_4487#1      ------------------------------------------------------------
                                                                                  

consensus_4487#0      TACGACAAGTTATGAAAGACATGGGCAAATGAAAAAAAATAAGTTAAGGCGTGGCAAATA 300
consensus_4487#1      ------------------------------------------------------------
                                                                                  

consensus_4487#0      ACATCCTCTTCGACTAACACGCACAGGCGCTGACATCAACACACGAAGTACATCGTTCAA 360
consensus_4487#1      ------------------------------------------------------------
                                                                                  

consensus_4487#0      CTTACCGCATAAAAACAGTAATTATGACAGAATTGGTTTAAACAGCAAAAATAAAACAGC 420
consensus_4487#1      ---------TAAAACAAGTAATTATGACAGAATTGGTTTAAACAGCAAAAATAAAACAGC 51
                               *****  ********************************************

consensus_4487#0      TGTTGAATATGAAGAAGAAAAAACAAACTGATTTTTATTCGAATTTGTAGATGTAAGTGA 480
consensus_4487#1      TGTTGAATATGAAGAAGAAAAAACAAACTGATTTTTATTCGAATTTGTAGATGTAAGTGA 111
                      ************************************************************

consensus_4487#0      AGTGTAGAATTAATGATGGATGATAATGATAAAGTTGTGTATATAAAAGAGAACAAGCTG 540
consensus_4487#1      AGTGTAGAATTAATGATGGATGATAATGATAAAGTTGTGTATATAAAAGAGAACAAGCTG 171
                      ************************************************************

consensus_4487#0      TGTAAATTGTAAAACTAAAAAAAGAATATTATAAATTTGATAACAACCTCAAAATTATTA 600
consensus_4487#1      TGTAAATTGCTCG--TGACGAATTC----------------------------------- 194
                      *********      * *  **                                      

consensus_4487#0      CATTTCATGATATTTATATAGTTTGACAAGAGAAGTATTATTCCAA 646
consensus_4487#1      ----------------------------------------------