cluster # 4497

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Schistosoma mansoni
cluster # 4497 cluster # 4497 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4497#0 length = 886 sequences # 2

consensus_4497#1 length = 459 sequences # 1

consensusID : consensus_4497#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 886
fasta sequence

                              [TCATAAATAATCAATCGAATTTAGCTCCAGATCTATTTAAATTAGATCAAATTTCCAATCATCATCCTTTAAGTACATTTGGCTTTTATTTATTTATGAAAACGAATGTATTACAGAAATTGTCTATACCTTCAGTGACAATGTTGAATTGTTTAAGACAAATTGAGTCACGATACAATTCAACTGCACCATTTCATAATTCAATTCATGCCTTAGATGTACTACATGCAACTTATCAATTATTTCAATGTAATAGTTTAAAAAATATCTTCAGTGATCTTGAAACATTCGCAATTTTCTTTGCTAGTGCTATACATGATATCGACCATCCTGGTTTAACAAATCAATACCTTATAAATACAAATCATGAATTAGCTCTATTATATAATGATATATCAGTTTTGGAAAATCATCATTTACATGTAGCATTTAAATTAATTAATACACAGATAGAATGTGTTTTTACAAAATATTTTACAAATCAACAAAAGCTGTTATTTCGTAAAATGGTTATCGCTTTAGTAAGTAAGGTATTATCTACCGATATGAGTAAACATATGTCATTATTGGCTGATTTAAAAACAAGCGTTGAAAAACAAAAGGCATTTCAAGGCAATGTAATCAATCTGGATAGTTATTCAGCTCGTATGCAGATATTAGAATGTATAATACATGCAGCTGATTTAAGTAATCCAACAAAGCCATTAAAAATCTATCAAGAATGGGTATCAAGAATTATGGAAGAAATGTTTCGTCAAGGTGATCAAGAGAAACAATATGGAATTGAAATTAGTCCAATGTGTGATAGAGAAACTGCATGCATTTACAGTACACAAATTGGTTTCATTGACTATATAGTTTATCCATTATGGGAGACAATGGCTGA]

[-] EMBL CD145431             [TCATAAATAATCAATCGAATTTAGCTCCAGATCTATTTAAATTAGATCAAATTTCCAATCATCATCCTTTAAGTACATTTGGCTTTTATTTATTTATGAAAACGAATGTATTACAGAAATTGTCTATACCTTCAGTGACAATGTTGAATTGTTTAAGACAAATTGAGTCACGATACAATTCAACTGCACCATTTCATAATTCAATTCATGCCTTAGATGTACTACATGCAACTTATCAATTATTTCAATGTAATAGTTTAAAAAATATCTTCAGTGATCTTGAAACATTCGCAATTTTCTTTGCTAGTGCTATACATGATATCGACCATCCTGGTTTAACAAATCAATACCTTATAAATACAAATCATGAATTAGCTCTATTATATAATGATATATCAGTTTTGGAAAATCATCATTTACATGTAGCATTTAAATTAATTAATACACAGATAGAATGTGTTTTTACAAAATAT                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD183473             [                                                                                                                                                                                                                                                                                                                                               TTAACAAATCAATACCTTATAAATACAAATCATGAATTAGCTCTATTATATAATGATATATCAGTTTTGGAAAATCATCATTTACATGTAGCATTTAAATTAATTAATACACAGATAGAATGTGATTTTACAAAATATTTTACAAATCAACAAAAGCTGTTATTTCGTAAAATGGTTATCGCTTTAGTAAGTAAGGTATTATCTACCGATATGAGTAAACATATGTCATTATTGGCTGATTTAAAAACAAGCGTTGAAAAACAAAAGGCATTTCAAGGCAATGTAATCAATCTGGATAGTTATTCAGCTCGTATGCAGATATTAGAATGTATAATACATGCAGCTGATTTAAGTAATCCAACAAAGCCATTAAAAATCTATCAAGAATGGGTATCAAGAATTATGGAAGAAATGTTTCGTCAAGGTGATCAAGAGAAACAATATGGAATTGAAATTAGTCCAATGTGTGATAGAGAAACTGCATGCATTTACAGTACACAAATTGGTTTCATTGACTATATAGTTTATCCATTATGGGAGACAATGGCTGA]




>consensus_4497#0
TCATAAATAATCAATCGAATTTAGCTCCAGATCTATTTAAATTAGATCAAATTTCCAATC
ATCATCCTTTAAGTACATTTGGCTTTTATTTATTTATGAAAACGAATGTATTACAGAAAT
TGTCTATACCTTCAGTGACAATGTTGAATTGTTTAAGACAAATTGAGTCACGATACAATT
CAACTGCACCATTTCATAATTCAATTCATGCCTTAGATGTACTACATGCAACTTATCAAT
TATTTCAATGTAATAGTTTAAAAAATATCTTCAGTGATCTTGAAACATTCGCAATTTTCT
TTGCTAGTGCTATACATGATATCGACCATCCTGGTTTAACAAATCAATACCTTATAAATA
CAAATCATGAATTAGCTCTATTATATAATGATATATCAGTTTTGGAAAATCATCATTTAC
ATGTAGCATTTAAATTAATTAATACACAGATAGAATGTGTTTTTACAAAATATTTTACAA
ATCAACAAAAGCTGTTATTTCGTAAAATGGTTATCGCTTTAGTAAGTAAGGTATTATCTA
CCGATATGAGTAAACATATGTCATTATTGGCTGATTTAAAAACAAGCGTTGAAAAACAAA
AGGCATTTCAAGGCAATGTAATCAATCTGGATAGTTATTCAGCTCGTATGCAGATATTAG
AATGTATAATACATGCAGCTGATTTAAGTAATCCAACAAAGCCATTAAAAATCTATCAAG
AATGGGTATCAAGAATTATGGAAGAAATGTTTCGTCAAGGTGATCAAGAGAAACAATATG
GAATTGAAATTAGTCCAATGTGTGATAGAGAAACTGCATGCATTTACAGTACACAAATTG
GTTTCATTGACTATATAGTTTATCCATTATGGGAGACAATGGCTGA

consensusID : consensus_4497#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 459
fasta sequence

                              [TTGAGTCACGATACAATTCAACTGCACCATTTCATAATTCAATTCATGCCTTAGATGTACTACATGCAACTTATCAATTATTTCAATGTAATAGTCTAAAAAATATCTTCAGTGATCTTGAAACATTTGCAATTTTCTTTGCTAGTGCTATACATGATATCGACCATCCTGGTTTAACAAATCAATACCTTATAAATACAAATCATGAATTAGCTCTATTATATAATGATATATCAGTTTTGGAAAATCATCATTTACATGTAGCATTTAAATTAATTAATACACAGATAGAATGTGATTTTACAAAATATTTTACAAATCAACAAAAGCTGTTATTTCGTAAAATGGTTATCGCTTTAGTAAGTAGTATGTTTAGTTTTTTTTAATATTTTAATAAATTAAATTTCTTTGAAAACCAATGATAGTTTTCCATGACTTANAAACAGCATTTGACTCTGT]

[+] EMBL CD189206             [TTGAGTCACGATACAATTCAACTGCACCATTTCATAATTCAATTCATGCCTTAGATGTACTACATGCAACTTATCAATTATTTCAATGTAATAGTCTAAAAAATATCTTCAGTGATCTTGAAACATTTGCAATTTTCTTTGCTAGTGCTATACATGATATCGACCATCCTGGTTTAACAAATCAATACCTTATAAATACAAATCATGAATTAGCTCTATTATATAATGATATATCAGTTTTGGAAAATCATCATTTACATGTAGCATTTAAATTAATTAATACACAGATAGAATGTGATTTTACAAAATATTTTACAAATCAACAAAAGCTGTTATTTCGTAAAATGGTTATCGCTTTAGTAAGTAGTATGTTTAGTTTTTTTTAATATTTTAATAAATTAAATTTCTTTGAAAACCAATGATAGTTTTCCATGACTTANAAACAGCATTTGACTCTGT]




>consensus_4497#1
TTGAGTCACGATACAATTCAACTGCACCATTTCATAATTCAATTCATGCCTTAGATGTAC
TACATGCAACTTATCAATTATTTCAATGTAATAGTCTAAAAAATATCTTCAGTGATCTTG
AAACATTTGCAATTTTCTTTGCTAGTGCTATACATGATATCGACCATCCTGGTTTAACAA
ATCAATACCTTATAAATACAAATCATGAATTAGCTCTATTATATAATGATATATCAGTTT
TGGAAAATCATCATTTACATGTAGCATTTAAATTAATTAATACACAGATAGAATGTGATT
TTACAAAATATTTTACAAATCAACAAAAGCTGTTATTTCGTAAAATGGTTATCGCTTTAG
TAAGTAGTATGTTTAGTTTTTTTTAATATTTTAATAAATTAAATTTCTTTGAAAACCAAT
GATAGTTTTCCATGACTTANAAACAGCATTTGACTCTGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4497#0      TCATAAATAATCAATCGAATTTAGCTCCAGATCTATTTAAATTAGATCAAATTTCCAATC 60
consensus_4497#1      ------------------------------------------------------------
                                                                                  

consensus_4497#0      ATCATCCTTTAAGTACATTTGGCTTTTATTTATTTATGAAAACGAATGTATTACAGAAAT 120
consensus_4497#1      ------------------------------------------------------------
                                                                                  

consensus_4497#0      TGTCTATACCTTCAGTGACAATGTTGAATTGTTTAAGACAAATTGAGTCACGATACAATT 180
consensus_4497#1      ------------------------------------------TTGAGTCACGATACAATT 18
                                                                ******************

consensus_4497#0      CAACTGCACCATTTCATAATTCAATTCATGCCTTAGATGTACTACATGCAACTTATCAAT 240
consensus_4497#1      CAACTGCACCATTTCATAATTCAATTCATGCCTTAGATGTACTACATGCAACTTATCAAT 78
                      ************************************************************

consensus_4497#0      TATTTCAATGTAATAGTTTAAAAAATATCTTCAGTGATCTTGAAACATTCGCAATTTTCT 300
consensus_4497#1      TATTTCAATGTAATAGTCTAAAAAATATCTTCAGTGATCTTGAAACATTTGCAATTTTCT 138
                      ***************** ******************************* **********

consensus_4497#0      TTGCTAGTGCTATACATGATATCGACCATCCTGGTTTAACAAATCAATACCTTATAAATA 360
consensus_4497#1      TTGCTAGTGCTATACATGATATCGACCATCCTGGTTTAACAAATCAATACCTTATAAATA 198
                      ************************************************************

consensus_4497#0      CAAATCATGAATTAGCTCTATTATATAATGATATATCAGTTTTGGAAAATCATCATTTAC 420
consensus_4497#1      CAAATCATGAATTAGCTCTATTATATAATGATATATCAGTTTTGGAAAATCATCATTTAC 258
                      ************************************************************

consensus_4497#0      ATGTAGCATTTAAATTAATTAATACACAGATAGAATGTGTTTTTACAAAATATTTTACAA 480
consensus_4497#1      ATGTAGCATTTAAATTAATTAATACACAGATAGAATGTGATTTTACAAAATATTTTACAA 318
                      *************************************** ********************

consensus_4497#0      ATCAACAAAAGCTGTTATTTCGTAAAATGGTTATCGCTTTAGTAAGTAAGGTATT--ATC 538
consensus_4497#1      ATCAACAAAAGCTGTTATTTCGTAAAATGGTTATCGCTTTAGTAAGTAGTATGTTTAGTT 378
                      ************************************************   * **   * 

consensus_4497#0      TACCGATATGAGTAAACATATGTCATTATTGGCTGATTTAAAAACAAGCGTTGAAAAACA 598
consensus_4497#1      TTTTTTAATATTTTAATAAATTAAATTTCTTTGAAAACCAATGATAGTTTTCCATGACTT 438
                      *      **   * ** * **   ***  *     *   **  * *    *  *  *   

consensus_4497#0      AAAGGCATTTCAAGGCAATGTAATCAATCTGGATAGTTATTCAGCTCGTATGCAGATATT 658
consensus_4497#1      ANAAACAGCATTTGACTCTGT--------------------------------------- 459
                      * *  **      * *  ***                                       

consensus_4497#0      AGAATGTATAATACATGCAGCTGATTTAAGTAATCCAACAAAGCCATTAAAAATCTATCA 718
consensus_4497#1      ------------------------------------------------------------
                                                                                  

consensus_4497#0      AGAATGGGTATCAAGAATTATGGAAGAAATGTTTCGTCAAGGTGATCAAGAGAAACAATA 778
consensus_4497#1      ------------------------------------------------------------
                                                                                  

consensus_4497#0      TGGAATTGAAATTAGTCCAATGTGTGATAGAGAAACTGCATGCATTTACAGTACACAAAT 838
consensus_4497#1      ------------------------------------------------------------
                                                                                  

consensus_4497#0      TGGTTTCATTGACTATATAGTTTATCCATTATGGGAGACAATGGCTGA 886
consensus_4497#1      ------------------------------------------------