cluster # 4503

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Schistosoma mansoni
cluster # 4503 cluster # 4503 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4503#0 length = 327 sequences # 1

consensus_4503#1 length = 211 sequences # 2

consensusID : consensus_4503#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 327
fasta sequence

                              [CAAGAAGTTGAGGAAAATTGTAATGAGTAATCACTAACTACTTTCTAATGGTTTTCTTTCCATGGATACTTATTTATTATTGTTTTTCATCTCAAAAAAATTTGGTACCCAAATTAAAGCTAAATCCACACATACCAACGTGTTCACAACATAGAAGTAAATACAAAAAATATAAAAAAATTAGAAACATATATTAAATAAATTAACCTTAAAAACAATATATTTAAACTCAATTTAAAAGAAATCTCAACCCTTAATATCATAAAATACAACAATAGAGCCAAAAATAATATTCAAAAATTCACATCTGTTATTTTTAACAAACCA]

[+] EMBL CD093052             [CAAGAAGTTGAGGAAAATTGTAATGAGTAATCACTAACTACTTTCTAATGGTTTTCTTTCCATGGATACTTATTTATTATTGTTTTTCATCTCAAAAAAATTTGGTACCCAAATTAAAGCTAAATCCACACATACCAACGTGTTCACAACATAGAAGTAAATACAAAAAATATAAAAAAATTAGAAACATATATTAAATAAATTAACCTTAAAAACAATATATTTAAACTCAATTTAAAAGAAATCTCAACCCTTAATATCATAAAATACAACAATAGAGCCAAAAATAATATTCAAAAATTCACATCTGTTATTTTTAACAAACCA]




>consensus_4503#0
CAAGAAGTTGAGGAAAATTGTAATGAGTAATCACTAACTACTTTCTAATGGTTTTCTTTC
CATGGATACTTATTTATTATTGTTTTTCATCTCAAAAAAATTTGGTACCCAAATTAAAGC
TAAATCCACACATACCAACGTGTTCACAACATAGAAGTAAATACAAAAAATATAAAAAAA
TTAGAAACATATATTAAATAAATTAACCTTAAAAACAATATATTTAAACTCAATTTAAAA
GAAATCTCAACCCTTAATATCATAAAATACAACAATAGAGCCAAAAATAATATTCAAAAA
TTCACATCTGTTATTTTTAACAAACCA

consensusID : consensus_4503#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 211
fasta sequence

                              [CAAGAAGTTGAGGAAAATTGTAATGAGTAATCACTAACTACTTTCTAATGG-TTTTCTTTCCATGGATACTTATTTATTATTGTTTTTCATCTCAAAAAAATTTGGTACCCAAATTAAAGCTAAATCCACACATACCAACGTGTTCACAACATACAAGTAAATACAACAAATATACAAAAAATAGTTTCATTCTGCTCTGAAAACATTAACT]

[+] EMBL CD093051             [CAAGAAGTTGAGGAAAATTGTAATGAGTAATCACTAACTACTTTCTAATGG TTTTCTTTCCATGGATACTTATTTATTATTGTTTTTCATCTCAAAAAAATTTGGTACCCAAATTAAAGCTAAATCCACACATACCAACGTGTTCACAACATACAAGTAAATACAACAAATATACAAAAAATAGTTTCATTCTGCTCTGAAAACATTAACT]
[+] EMBL CD093064             [CAAGAAGTTGAGGAAAATTGTAATGAGTAATCACTAACTACTTTCTAATGGCCTCTCTTTCCATGGATACTTATTTATTATTGCTTTTCATCTCAAAAAAATTTGGTACCCAAATTAAAGCTAAATCCACACATACCAACGTGTTCACAACATACA                                                        ]




>consensus_4503#1
CAAGAAGTTGAGGAAAATTGTAATGAGTAATCACTAACTACTTTCTAATGGTTTTCTTTC
CATGGATACTTATTTATTATTGTTTTTCATCTCAAAAAAATTTGGTACCCAAATTAAAGC
TAAATCCACACATACCAACGTGTTCACAACATACAAGTAAATACAACAAATATACAAAAA
ATAGTTTCATTCTGCTCTGAAAACATTAACT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4503#0      CAAGAAGTTGAGGAAAATTGTAATGAGTAATCACTAACTACTTTCTAATGGTTTTCTTTC 60
consensus_4503#1      CAAGAAGTTGAGGAAAATTGTAATGAGTAATCACTAACTACTTTCTAATGGTTTTCTTTC 60
                      ************************************************************

consensus_4503#0      CATGGATACTTATTTATTATTGTTTTTCATCTCAAAAAAATTTGGTACCCAAATTAAAGC 120
consensus_4503#1      CATGGATACTTATTTATTATTGTTTTTCATCTCAAAAAAATTTGGTACCCAAATTAAAGC 120
                      ************************************************************

consensus_4503#0      TAAATCCACACATACCAACGTGTTCACAACATAGAAGTAAATACAAAAAATATAAAAAAA 180
consensus_4503#1      TAAATCCACACATACCAACGTGTTCACAACATACAAGTAAATACAACAAATATACAAAAA 180
                      ********************************* ************ ******* *****

consensus_4503#0      TTAGAAACAT---ATATTAAATAAATTAACCTTAAAAACAATATATTTAAACTCAATTTA 237
consensus_4503#1      ATAGTTTCATTCTGCTCTGAAAACATTAACT----------------------------- 211
                       ***   ***       * ** * ******                              

consensus_4503#0      AAAGAAATCTCAACCCTTAATATCATAAAATACAACAATAGAGCCAAAAATAATATTCAA 297
consensus_4503#1      ------------------------------------------------------------
                                                                                  

consensus_4503#0      AAATTCACATCTGTTATTTTTAACAAACCA 327
consensus_4503#1      ------------------------------