These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4544#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 279 fasta sequence [GAGCTCGGTACCCTGCCATCACCGACTGCCGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGAAGCCGAGTCGGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACGCAGAAAGTGAAGTGGTAGAACAGGTTGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAAC] [+] EMBL CD168535 [GAGCTCGGTACCCTGCCATCACCGACTGCCGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGAAGCCGAGTCGGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACGCAGAAAGTGAAGTGGTAGAACAGGTTGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAAC] consensusID : consensus_4544#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 246 fasta sequence [TGTGAAATCCCCAGAAAACGTCTGTGTACACCTAAGCAATTTATTAAATTCTCCAGGTTGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGACACGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTGGGTGAAGGCGTATTTGAAGGTGAGCACGGAAGCCGAGTCGGCAGTCGAAGTGTA] [+] EMBL CD060502 [TGTGAAATCCCCAGAAAACGTCTGTGTACACCTAAGCAATTTATTAAATTCTCCAGGTTGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGACACGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTGGGTGAAGGCGTATTTGAAGGTGAGCACGGAAGCCGAGTCGGCAGTCGAAGTGTA] consensusID : consensus_4544#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 85 fasta sequence [TAGAGATTCCAGTTCACGGTAGCCGTGTTGGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACGCAGCAAAGT] [+] EMBL CD059364 [TAGAGATTCCAGTTCACGGTAGCCGTGTTGGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACGCAGCAAAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4544#0 GAGCTCGGTACCCTGCCATCACCGACTGCCGGGAACGATTGGTTGAGCGTGTCGGTGAGA 60 consensus_4544#2 ------------------------------------------------------------ consensus_4544#1 -------------------TGTGAAATCCCCAGAAAACGTCTGTGTACACCTAAGCAATT 41 consensus_4544#0 TGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGAAGCCGAGT 120 consensus_4544#2 ------------------------------TAGAGATTCCAGTTCA--CGGTAGCCGTGT 28 consensus_4544#1 TATTAAATTCTCCAGGTTGAATCGG--AACGTGTGTCTGT-GTTCG--CTCCAGTCGAAT 96 * * * * * ** ** * consensus_4544#0 CGGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACGCAG-AAAGTGAA 179 consensus_4544#2 TGGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACGCAGCAAAGT--- 85 consensus_4544#1 TGGAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGACACGGGAACGATTGGTTGAG 156 ** ** * * * * ***** * *** ** *** * * consensus_4544#0 GTGGTAGAACAGGTTGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGAGTCT 239 consensus_4544#2 ------------------------------------------------------------ consensus_4544#1 CGTGTCGGTGAGATGGAGGCGGAA--TATGGTGAAGTGGGTGAAGGCGTATTTGAAGGTG 214 consensus_4544#0 GAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAAC 279 consensus_4544#2 ---------------------------------------- consensus_4544#1 AGCACGGAAGCCGAGTCGGCAGTCGAAGTGTA-------- 246 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||