These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4547#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 606 fasta sequence [TCCAGGACGCACGTTTCGTTTCGTTTGAGACTCGTCAGGATTCAGTAGCTAAGTGAAGTTTAAATTCACTTAGTATTGTTTGTTTGAAAATAAAGTGAAAATATGGGTAACCTAATCGACTTTAATTTCTAAATTAAATAAAGGTACAGTGATTTCGCTATGGTCTGAGAACCATTCAGTAAATACTTCATTTGTCTCAGACTTGTCTGTTCCCTCGTTTCCACATCAATCACACACTGTTCTCATTCTCTTCTCTTTAATCTTCTTAACCTCCTGTAGCCAGACACTTCACTTTCGTCTGATGATACTTACTACTTATATCTGTCGACATCAGTAGCACACTATATTAGTAATGAACTGCGGCTTTACAGATCCACGACCACGCGTCTGGCAATCGAACCTAAGGCTTTCGATGTCGTGCATGAACGCCTAACCTGCCAATCATTGATCCGGCATCCAATCGTGCAAATGTCTAACTTCAGAGAGTTAGCAATGTTGACCAATAATCTTCCATTTTCTTTGGTTGGNCACTTGCTTCACATTCGACAACTNTGGACTNCTCTAGTCACAACTTATCACTANACTTCTGGAATTTCCTTCTCGAAG] [+] EMBL CD194672 [TCCAGGACGCACGTTTCGTTTCGTTTGAGACTCGTCAGGATTCAGTAGCTAAGTGAAGTTTAAATTCACTTAGTATTGTTTGTTTGAAAATAAAGTGAAAATATGGGTAACCTAATCGACTTTAATTTCTAAATTAAATAAAGGTACAGTGATTTCGCTATGGTCTGAGAACCATTCAGTAAATACTTCATTTGTCTCAGACTTGTCTGTTCCCTCGTTTCCACATCAATCACACACTGTTCTCATTCTCTTCTCTTTAATCTTCTTAACCTCCTGTAGCCAGACACTTCACTTTCGTCTGATGATACTTACTACTTATATCTGTCGACATCAGTAGCACACTATATTAGTAATGAACTGCGGCTTTACAGATCCACGACCACGCGTCTGGCAATCGAACCTAAGGCTTTCGATGTCGTGCATGAACGCCTAACCTGCCAATCATTGATCCGGCATCCAATCGTGCAAATGTCTAACTTCAGAGAGTTAGCAATGTTGACCAATAATCTTCCATTTTCTTTGGTTGGNCACTTGCTTCACATTCGACAACTNTGGACTNCTCTAGTCACAACTTATCACTANACTTCTGGAATTTCCTTCTCGAAG] [+] EMBL CD194706 [TCCAGGACGCACGTTTCGTTTCGTTTGACACTCGTCAGGATTCAGTAGCTAAGTGAAGTTTAAATTCACTTAATATTGTTTGTATGAAAATAAAGTGAAAATATGGGTGACCTAATCGACTTTAATTTATAAATTAAATAAAGGTACAGTGATTTCGCTATGGTCTGAGAACCATTCAGTAAATACTTCATTTGACTCACACTTGTCTGTTCCCTCGTTTCCACATCAATCACACACTGTTCTCATTCTCTTGTCTTTAATCTTCTTAACCTCCTGTAGCCAGACACTTCACTTTCGTGTGATGATACTTACTACTTATATCTGTCGACATCAGTAGCACACTATATTAATAATGAACTGCGGCTTTACAGATCCACGACCACACGTCTGGCAATCGAACCTAAGGCTTTCGATGTCGTGCATGAACGCCTAACCTGCCAATCATTGATCCGGCATCCAATCGTGCAAATGTCTAACTTCAGAGAGTTAGCAATGTTGACCAATAATCTTCCATTTTCTTTGGTTGGCAACTTGCTTCACATTCGACAACTTTGGACTCCTCTAGTCACAACTTATCACTAAACTT ] consensusID : consensus_4547#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 331 fasta sequence [TGGCAATAGAACGTAAGGCTTTGGATGTCGTGCATGTACGCATGACTTGCCAATCATTGATCCGGCATCCAATCGTGCAAATGTCTAACTTCAGAGAGTTAGCAATGTTGACCAATAATCTTCCATTTTCTTTGGTTGGCAACTTGCTTCACATTCGACAACTTTGGACTCCGCTAGTCACAACTTATCAATAAACTTCTGAAATTTCCTTCTAGAAGTGAATATAACGTTATATGTTGGTTCGGTGGCTCAGAGGTCAAGAGCCCGGCATGACACCAAAAGTCTTGGATTCGGTCTCCTCATGAGTTGCGAATGTGCACTGATGAGCAGT] [-] EMBL CD149883 [TGGCAATAGAACGTAAGGCTTTGGATGTCGTGCATGTACGCATGACTTGCCAATCATTGATCCGGCATCCAATCGTGCAAATGTCTAACTTCAGAGAGTTAGCAATGTTGACCAATAATCTTCCATTTTCTTTGGTTGGCAACTTGCTTCACATTCGACAACTTTGGACTCCGCTAGTCACAACTTATCAATAAACTTCTGAAATTTCCTTCTAGAAGTGAATATAACGTTATATGTTGGTTCGGTGGCTCAGAGGTCAAGAGCCCGGCATGACACCAAAAGTCTTGGATTCGGTCTCCTCATGAGTTGCGAATGTGCACTGATGAGCAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4547#0 TCCAGGACGCACGTTTCGTTTCGTTTGAGACTCGTCAGGATTCAGTAGCTAAGTGAAGTT 60 consensus_4547#1 ------------------------------------------------------------ consensus_4547#0 TAAATTCACTTAGTATTGTTTGTTTGAAAATAAAGTGAAAATATGGGTAACCTAATCGAC 120 consensus_4547#1 ------------------------------------------------------------ consensus_4547#0 TTTAATTTCTAAATTAAATAAAGGTACAGTGATTTCGCTATGGTCTGAGAACCATTCAGT 180 consensus_4547#1 ------------------------------------------------------------ consensus_4547#0 AAATACTTCATTTGTCTCAGACTTGTCTGTTCCCTCGTTTCCACATCAATCACACACTGT 240 consensus_4547#1 ------------------------------------------------------------ consensus_4547#0 TCTCATTCTCTTCTCTTTAATCTTCTTAACCTCCTGTAGCCAGACACTTCACTTTCGTCT 300 consensus_4547#1 ------------------------------------------------------------ consensus_4547#0 GATGATACTTACTACTTATATCTGTCGACATCAGTAGCACACTATATTAGTAATGAACTG 360 consensus_4547#1 ------------------------------------------------------------ consensus_4547#0 CGGCTTTACAGATCCACGACCACGCGTCTGGCAATCGAACCTAAGGCTTTCGATGTCGTG 420 consensus_4547#1 ----------------------------TGGCAATAGAACGTAAGGCTTTGGATGTCGTG 32 ******* **** ********* ********* consensus_4547#0 CATGAACGCCTAACCTGCCAATCATTGATCCGGCATCCAATCGTGCAAATGTCTAACTTC 480 consensus_4547#1 CATGTACGCATGACTTGCCAATCATTGATCCGGCATCCAATCGTGCAAATGTCTAACTTC 92 **** **** * ** ********************************************* consensus_4547#0 AGAGAGTTAGCAATGTTGACCAATAATCTTCCATTTTCTTTGGTTGGNCACTTGCTTCAC 540 consensus_4547#1 AGAGAGTTAGCAATGTTGACCAATAATCTTCCATTTTCTTTGGTTGGCAACTTGCTTCAC 152 *********************************************** *********** consensus_4547#0 ATTCGACAACTNTGGACTNCTCTAGTCACAACTTATCACTANACTTCTGGAATTTCCTTC 600 consensus_4547#1 ATTCGACAACTTTGGACTCCGCTAGTCACAACTTATCAATAAACTTCTGAAATTTCCTTC 212 *********** ****** * ***************** ** ******* ********** consensus_4547#0 TCGAAG------------------------------------------------------ 606 consensus_4547#1 TAGAAGTGAATATAACGTTATATGTTGGTTCGGTGGCTCAGAGGTCAAGAGCCCGGCATG 272 * **** consensus_4547#0 ----------------------------------------------------------- consensus_4547#1 ACACCAAAAGTCTTGGATTCGGTCTCCTCATGAGTTGCGAATGTGCACTGATGAGCAGT 331 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||