These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4548#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 406 fasta sequence [ATGAATACGCTATTTAGAAGTATATTTGTTGTAGTCGTTGTATATGCCTATTTTGATATGGCGAATGGTGTACCGGAGCCCCCTAGGGTCCCCGATGAAGATGCAGTACCAGTGAGAGCAAAACCCGCTACTCCAATCAAGATATCTACTGATAAGATACCAGTGAACAAGACAATGAAAATACAAACCACACCGTCCAAAG-AAAAGAAACAAAAACCTG-ATCCGAAGAGATATAAAAGATCTTCATACCAAAAAGATAAGAAGGCCAAATCGTCATCATCAACTTTG-ACCATCGGGTATCCAATCCTCTTCATAACTACACCATTTGTTATTTCAAAGTTCCTTCTTTGAATTTTACACCAATTTTGATATATTGCTATGAACTCGGATAGTGTTCATTTTTATC] [+] EMBL CD140595 [ATGAATACGCTATTTAGAAGTATATTTGTTGTAGTCGTTGTATATGCCTATTTTGATATGGCGAATGGTGTACCGGAGCCCCCTAGGGTCCCCGATGAAGATGCAGTACCAGTGAGAGCAAAACCCGCTACTCCAATCAAGATATCTACTGATAAGATACCAGTGAACAAGACAATGAAAATACAAACCACACCGTCCAAAG AAAAGAAACAAAAACCTG ATCCGAAGAGATATAAAAGATCTTCATACCAAAAAGATAAGAAGGCCAAATCGTCATCATCAACTTTG ACCATCGGGTATCCAATCCTCTTCATAACTACACCATTTGTTATTTCAAAGTTCCTTCTTTGAATTTTACACCAATTTTGATATATTGCTATGAACTCGGATAGTGTTCATTTTTATC] [+] EMBL AA559652 [ AGTCGTTGTATATGCCTATTTTGATATGGCGAATGGTGTACCGGAGCCCCCTAGGGTCCCCGATGAAGATGCAGTNCCAGTGAGAGCAAAACCCGCTACTCCAATCAAGATATCTACTGATAAGATACCAGTGAACAAGACAATGANAATACAAACCACACCGTCCAAAGAAAAAGAAACAAAAACCTGCATCCGAAGAGATATAAAAGATCTTCATACCAAAAAGATAAGAAGGCCAAATCGTCATCATCAACTTTGAACCATCGGGTATCCAATCCTCTTCATAACTACCCCA ] consensusID : consensus_4548#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 225 fasta sequence [GAAAGGAACAATGAATACGCTATTTAGAAGTATATTTGTTGTAGTCGTTGTATATGCCTATTTTGATATGGCGAATGGTGTACCGGAGCCCCCTAGGGTCCCCGATGAAGATGCAGTACCAGTGAGAGCAAAACCCGCTACTCCAATCAAGATATCTACTGATAAGATACCAGTGAACAAGACAATGAAAATACAAACCACACCACCCATCACCTGAAGTCGGGG] [+] EMBL CD134150 [GAAAGGAACAATGAATACGCTATTTAGAAGTATATTTGTTGTAGTCGTTGTATATGCCTATTTTGATATGGCGAATGGTGTACCGGAGCCCCCTAGGGTCCCCGATGAAGATGCAGTACCAGTGAGAGCAAAACCCGCTACTCCAATCAAGATATCTACTGATAAGATACCAGTGAACAAGACAATGAAAATACAAACCACACCACCCATCACCTGAAGTCGGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4548#0 ----------ATGAATACGCTATTTAGAAGTATATTTGTTGTAGTCGTTGTATATGCCTA 50 consensus_4548#1 GAAAGGAACAATGAATACGCTATTTAGAAGTATATTTGTTGTAGTCGTTGTATATGCCTA 60 ************************************************** consensus_4548#0 TTTTGATATGGCGAATGGTGTACCGGAGCCCCCTAGGGTCCCCGATGAAGATGCAGTACC 110 consensus_4548#1 TTTTGATATGGCGAATGGTGTACCGGAGCCCCCTAGGGTCCCCGATGAAGATGCAGTACC 120 ************************************************************ consensus_4548#0 AGTGAGAGCAAAACCCGCTACTCCAATCAAGATATCTACTGATAAGATACCAGTGAACAA 170 consensus_4548#1 AGTGAGAGCAAAACCCGCTACTCCAATCAAGATATCTACTGATAAGATACCAGTGAACAA 180 ************************************************************ consensus_4548#0 GACAATGAAAATACAAACCACACCGTCCAAAGAAAAGAAACAAAAACCTGATCCGAAGAG 230 consensus_4548#1 GACAATGAAAATACAAACCACACCACCCATCACCTGAAGTCGGGG--------------- 225 ************************ *** * * consensus_4548#0 ATATAAAAGATCTTCATACCAAAAAGATAAGAAGGCCAAATCGTCATCATCAACTTTGAC 290 consensus_4548#1 ------------------------------------------------------------ consensus_4548#0 CATCGGGTATCCAATCCTCTTCATAACTACACCATTTGTTATTTCAAAGTTCCTTCTTTG 350 consensus_4548#1 ------------------------------------------------------------ consensus_4548#0 AATTTTACACCAATTTTGATATATTGCTATGAACTCGGATAGTGTTCATTTTTATC 406 consensus_4548#1 -------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||