These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4549#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 510 fasta sequence [CACGTGTTGAACGTCAATCCCTTATTAATGAAATACTTGAAGAGACTGTGTTAACTGAAAATCAAATTGTACAAAATGGACAAAATGAATCTAGAGAATTTCGGGTAGACGATAGTTTAAGTGAGAATGATGATGACAATGATGATGAACCCAGGACGAGAAGTTCAGTTTTAGTTATGATGATGAAAGATCAATTTGCTAATTATGTTATTCAGAAAATGTTAGATGTTGCTGAACAACCAATAAGAAAAGAGCTTATGATTCAAATTCGTCCACATTTAGGTATTTTACGTAAATATACTTATGGTAAACATATCATTAATAAGATGGAAAAATATTACATGAAAACAAATCAGTTACATTTAGCCGTTGGATTAAATTCTCCATCACCACCTCCATCTTTAGATCTTGTAAACGCTTCTTCAGACATCACTCAACCGAATTTAAATTCAACTATTCGTAGTTGTGGTAATACACACAACAGTTCAGCTGCATCATTACTTCCACCAT] [+] EMBL CD153213 [CACGTGTTGAACGTCAATCCCTTATTAATGAAATACTTGAAGAGACTGTGTTAACTGAAAATCAAATTGTACAAAATGGACAAAATGAATCTAGAGAATTTCGGGTAGACGATAGTTTAAGTGAGAATGATGATGACAATGATGATGAACCCAGGACGAGAAGTTCAGTTTTAGTTATGATGATGAAAGATCAATTTGCTAATTATGTTATTCAGAAAATGTTAGATGTTGCTGAACAACCAATAAGAAAAGAGCTTATGATTCAAATTCGTCCACATTTAGGTATTTTACGTAAATATACTTATGGTAAACATATCATTAATAAGATGGAAAAATATTACATGAAAACAAATCAGTTACATTTAGCCGTTGGATTAAATTCTCCATCACCACCTCCATCTTTAGATCTTGTAAACGCTTCTTCAGACATCACTCAACCGAATTTAAATTCAACTATTCGTAGTTGTGGTAATACACACAACAGTTCAGCTGCATCATTACTTCCACCA ] [-] EMBL CD153160 [ CTTCTTCAAACATCACTCANCCGAATTTAAATTCAACTATTCGTAGTTGTGGTAATACACACAACAGTTCAGCTGCATCATTACTTCCACCAT] consensusID : consensus_4549#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 225 fasta sequence [ATCTAGAGGATCCCGTTGCCGAAGGTGTCTGAAGATTGGTGGAGGTGCTGATGGTGTGGATGTATCTCTTCCGAAACCCGAACTCGATGTCTCCATGGAGGTTCCCGATGTTGATGTGTCCGCCTCTGGGCCCGAAATCGGTGTATCAGGTGGTGCGATTAGAGGTGGGGAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGAAGCCGAGTCGGCAGTCGAAGTG] [+] EMBL CD064584 [ATCTAGAGGATCCCGTTGCCGAAGGTGTCTGAAGATTGGTGGAGGTGCTGATGGTGTGGATGTATCTCTTCCGAAACCCGAACTCGATGTCTCCATGGAGGTTCCCGATGTTGATGTGTCCGCCTCTGGGCCCGAAATCGGTGTATCAGGTGGTGCGATTAGAGGTGGGGAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGAAGCCGAGTCGGCAGTCGAAGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4549#0 CACGTGTTGAACGTCAATCCCTTATTAATGAAATACTTGAAGAGACTGTGTTAACTGAAA 60 consensus_4549#1 ------------------------------------------------------------ consensus_4549#0 ATCAAATTGTACAAAATGGACAAAATGAATCTAGAGAATTTCGG-GTAGACGATAGTTTA 119 consensus_4549#1 ----------------------------ATCTAGAGGATCCCGTTGCCGAAGGTGTCTGA 32 ******** ** ** * ** * * * * consensus_4549#0 AG--TGAGAATGATGATGACAATGATGATGAACCCAGGACGAGAAGTTCAGTTTTAGTTA 177 consensus_4549#1 AGATTGGTGGAGGTGCTGATGGTGTGGATGTATCTCTTCCGAAA---CCCGAACTCGATG 89 ** ** * ** *** ** **** * * *** * * * * * * consensus_4549#0 TGATGATGAAAGATCAATTTGCTAATTATGTTATTCAGAAAATGTTAGATGTTGCTGAAC 237 consensus_4549#1 TCTCCATGGAGGTTCCCGATGTTGAT-GTGTCCGCCTCTGGGCCCGAAAT-CGGTGTATC 147 * *** * * ** ** * ** *** * * ** * * * consensus_4549#0 AACCAATAAGAAAAGAGCTTATGATTCAAATTCGTCCACATTTAGGTATTTTACGTAAAT 297 consensus_4549#1 AGGTGGTGCGATTAGAGGTGGGGAGTTGG-TGAAGGCGTATTTGAAGGTGAGACGGAAGC 206 * * ** **** * ** * * * **** * *** ** consensus_4549#0 ATACTTATGGTAAACATATCATTAATAAGATGGAAAAATATTACATGAAAACAAATCAGT 357 consensus_4549#1 CGAGT--CGGCAGTCGAAGTG--------------------------------------- 225 * * ** * * * consensus_4549#0 TACATTTAGCCGTTGGATTAAATTCTCCATCACCACCTCCATCTTTAGATCTTGTAAACG 417 consensus_4549#1 ------------------------------------------------------------ consensus_4549#0 CTTCTTCAGACATCACTCAACCGAATTTAAATTCAACTATTCGTAGTTGTGGTAATACAC 477 consensus_4549#1 ------------------------------------------------------------ consensus_4549#0 ACAACAGTTCAGCTGCATCATTACTTCCACCAT 510 consensus_4549#1 --------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||