These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4552#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 707 fasta sequence [TAAAAAACGGAAACTTCCTGAAGTACATTGTGCTGAAAATTCTATATTGTACCAAAAACATAATATTGAATAAAACTAATAATAATAGTAATAGTTGGATGAAATATTTCTTACCATCTTCACAATTTATTAGTCCAAGGATTTTCGATTGCAACTGACTTTCCTCGATTTTCGTAGGAATCTGAAAAAAGATTGTTGAATGTATGAGACAAGATCTGCTACCACACAATCGTTTATATGAAATCGAATGATTACTGGAGAAATGTATCATCATTTAGATCATCTCGTTAAAAGCCAACTAATCGCACTCACACTAGGCATACTGATATTCTCAGTTTACTTTCCATGAATGTTCCATCCAATCTGTATAGATATTCTTGTCAAATTCGGTCAAGTGTTATGAACTATCTCTCCATCATGATATGTGGCGATAACTTGTGAGATGAATATCACCGCCTATTGAAATGAAATGAGATTGTGAATATNTGACAGAATGCTGCACTCAGTATATTCCACAGTTAACATTCTGAACAGTCGATCGTCACTACATGAAATAAAACTCAACAGAATATGACTCTTTCCGTATAGTAGGCAAACATTCACAGCCAGTTACTATTTGGCACGAACA-GTTAATGTTTCTTGTGAAAGAACTTTACTTCTGATTATTCACTGTTCATACTGTAGTGAACAGAACACTAGTTGGGTAC] [+] EMBL CD122337 [TAAAAAACGGAAACTTCCTGAAGTACATTGTGCTGAAAATTCTATATTGTACCAAAAACATAATATTGAATAAAACTAATAATAATAGTAATAGTTGGATGAAATATTTCTTACCATCTTCACAATTTATTAGTCCAAGGATTTTCGATTGCAACTGACTTTCCTCGATTTTCGTAGGAATCTGAAAAAAGATTGTTGAATGTATGAGACAAGATCTGCTACCACACAATCGTTTATATGAAATCGAATGATTACTGGAGAAATGTATCATCATTTAGATCATCTCGTTAAAAGCCAACTAATCGCACTCACACTAGGCATACTGATATTCTCAGTTTACTTTCCATGAATGTTCCATCCAATCTGTATAGATATTCTTGTCAAATTCGGTCAAGTGTTATGAACTATCTCTCCATCATGATATGTGGCGATAACTTGTGAGATGAATATCACCGCCTATTGAAATGAAATGAGATTGTGAATATNTGACAGAATGCTGCACTCAGTATATTCCACAGTTAACATTCTGAACAGTCGATCGTCACTACATGAAATAAAACTCAACAGAATATGACTCTTTCCGTATAGTAGGCAAACATTCACAGCCAGTTACTATTTGGCACGAACA GTTAATGTTTCTTGTGAAAGAACTTTACTTCTGATTATTCACTGTTCATACTGTAGTGAACAGAACACTAGTTGGGTA ] [-] EMBL CD122324 [ ATATGAAATCGAATGATTACTGGAGAAATGTATCATCATTTAGATCATCTCGTTAAAAGCCAACTAATCGCACTCACACTAGGCATACTGATATTCTCAGTTTACTTTCCATGAATGTTCCATCCAATCTGTATAGATATTCTTGTCAAATTCGGTCAAGTGTTATGAACTATCTCTCCATCATGATATGTGGCGATAACTTGTGAGATGAATATCACCGCCTATTGAAATGAAATGAGATTGTGAATATTTGACAGAATGCTGCACTCAGTATATTCCACAGTTAACATTCTGAACAGTCGATCGTCACTACATGAAATAAAACTCAACAGAATATGACTCTTTCCGTATAGTAGGCAAACATTCACAGCCAGTTACTATTTGGCACGAACAGGTTAATGTTTTTTGTGAAAGAACTTTACTTCTGATTATTCACTGTTCATACTGTAGTGAACAGAACACTAGTTGGGTAC] consensusID : consensus_4552#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 361 fasta sequence [TATATTGTACCAAAAATATAATACTGAATAAAGCTAATAAAAATAATAGTTATAATTCGCTGAAATATTTCTTACTTCCTCCACAAATTATTGTTCCAACGATTCTCGTTTTGAACTGATTTTCCCCAATTTCCGCAGGAATCTGAAAAAAGATTGTTGAATGTCTGAGACAAGATCTGATACCACACAATCATCTATATGAAATCGAATAATTACTGGAGAAAAGTATCATCATTTAGATCATCTCATTAAAAGCCAACTAATCGCACTCACACTACGCATACTGATATTCTCAGTTTACTTTCCATGAATGTTCCATCCAATGTGTACAGATATTCTTGTCAACTTCGGTCAAGTGTTA] [-] EMBL CD112431 [TATATTGTACCAAAAATATAATACTGAATAAAGCTAATAAAAATAATAGTTATAATTCGCTGAAATATTTCTTACTTCCTCCACAAATTATTGTTCCAACGATTCTCGTTTTGAACTGATTTTCCCCAATTTCCGCAGGAATCTGAAAAAAGATTGTTGAATGTCTGAGACAAGATCTGATACCACACAATCATCTATATGAAATCGAATAATTACTGGAGAAAAGTATCATCATTTAGATCATCTCATTAAAAGCCAACTAATCGCACTCACACTACGCATACTGATATTCTCAGTTTACTTTCCATGAATGTTCCATCCAATGTGTACAGATATTCTTGTCAACTTCGGTCAAGTGTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4552#0 TAAAAAACGGAAACTTCCTGAAGTACATTGTGCTGAAAATTCTATATTGTACCAAAAACA 60 consensus_4552#1 ------------------------------------------TATATTGTACCAAAAATA 18 **************** * consensus_4552#0 TAATATTGAATAAAACTAATAA---TAATAGTAATAGTTGGATGAAATATTTCTTACCAT 117 consensus_4552#1 TAATACTGAATAAAGCTAATAAAAATAATAGTTATAATTCGCTGAAATATTTCTTACTTC 78 ***** ******** ******* ******* *** ** * *************** consensus_4552#0 CTTCACAATTTATTAGTCCAAGGATTTTCGATTGCAACTGACTTTCCTCGATTTTCGTAG 177 consensus_4552#1 CTCCACAAATTATTGTTCCAACGATTCTCGTTTTGAACTGATTTTCCCCAATTTCCGCAG 138 ** ***** ***** ***** **** *** ** ****** ***** * **** ** ** consensus_4552#0 GAATCTGAAAAAAGATTGTTGAATGTATGAGACAAGATCTGCTACCACACAATCGTTTAT 237 consensus_4552#1 GAATCTGAAAAAAGATTGTTGAATGTCTGAGACAAGATCTGATACCACACAATCATCTAT 198 ************************** ************** ************ * *** consensus_4552#0 ATGAAATCGAATGATTACTGGAGAAATGTATCATCATTTAGATCATCTCGTTAAAAGCCA 297 consensus_4552#1 ATGAAATCGAATAATTACTGGAGAAAAGTATCATCATTTAGATCATCTCATTAAAAGCCA 258 ************ ************* ********************** ********** consensus_4552#0 ACTAATCGCACTCACACTAGGCATACTGATATTCTCAGTTTACTTTCCATGAATGTTCCA 357 consensus_4552#1 ACTAATCGCACTCACACTACGCATACTGATATTCTCAGTTTACTTTCCATGAATGTTCCA 318 ******************* **************************************** consensus_4552#0 TCCAATCTGTATAGATATTCTTGTCAAATTCGGTCAAGTGTTATGAACTATCTCTCCATC 417 consensus_4552#1 TCCAATGTGTACAGATATTCTTGTCAACTTCGGTCAAGTGTTA----------------- 361 ****** **** *************** *************** consensus_4552#0 ATGATATGTGGCGATAACTTGTGAGATGAATATCACCGCCTATTGAAATGAAATGAGATT 477 consensus_4552#1 ------------------------------------------------------------ consensus_4552#0 GTGAATATNTGACAGAATGCTGCACTCAGTATATTCCACAGTTAACATTCTGAACAGTCG 537 consensus_4552#1 ------------------------------------------------------------ consensus_4552#0 ATCGTCACTACATGAAATAAAACTCAACAGAATATGACTCTTTCCGTATAGTAGGCAAAC 597 consensus_4552#1 ------------------------------------------------------------ consensus_4552#0 ATTCACAGCCAGTTACTATTTGGCACGAACAGTTAATGTTTCTTGTGAAAGAACTTTACT 657 consensus_4552#1 ------------------------------------------------------------ consensus_4552#0 TCTGATTATTCACTGTTCATACTGTAGTGAACAGAACACTAGTTGGGTAC 707 consensus_4552#1 -------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||