These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4556#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 929 fasta sequence [TAATTTTAATTGGATTGATCATTTTCGAATCTTTTCTACGACTTATATTACCAGCTAGAGCATTTAAAATTGCACCTTCATTAAATTCATCTACTGTTTCATCATTATCATCTGATATGTTTATTGTTAATAATGACAAAGTTGGTGATCGATCATCAACGCTTCATTCTCATCATCGTCCTAATTATAAATCGAAAATGTAAATTATTGGATCTATATATATATTACATAATAATCTTTAACTATTATTTGATAATTATTAAACAATAAAAATAGCACTTTGTGTTTCCTTTTCTTCTTGTTTTAAAAAAAAAAAGATTTCTTCATTATTTTCATTTAACAATGTTTATTTTATCCCCCTTCATAGATAATTACATAGAGTTAGTCATTTTTCCACTCTCTAAGTGTTATCTTGATATTTTGATTTAGATTTTATCAGTTTAATTGTCCTCTGTTTCATATTGTCAATTTATTTCATTCTGATATGTTTATGTTATATCTTGTGGTCGAATGGATACCCAATTAATGTGTGACGTGATAAGACCTTCAATTAGAGAGCAGTGAATTATCGATTGGAATAATGACACACG-AAAACCTTACGAGCAGTCTAGAGCGCTTATCGATCCTGCTTCTGCCTAGTCACTATTATTATCAGGACACAACAGTTTATTATTATTATCATTGAAAATTTACCGCTCTCTTGTCTGGTAATCACGAGAATATATATATGTCCANCATGGGAAGCGCTGTGAAGTTGTGGCTTNGTTTTTCCAAAACAACAATATNATCAATATGAAAAGGATAATTATTTGTTTANTCGTCTCATCAGNTACTTNNCCTNCCCCTCNCTTTTANTATGTNCCCTTATGAAATTNGGNTCTTCAAAATACATTACTTTTTTATTCCCCCTAATTTTAAAGGAAAAGTCT] [+] EMBL AI976777 [TAATTTTAATTGGATTGATCATTTTCGAATCTTTTCTACGACTTATATTACCAGCTAGAGCATTTAAAATTGCACCTTCATTAAATTCATCTACTGTTTCATCATTATCATCTGATATGTTTATTGTTAATAATGACAAAGTTGGTGATCGATCATCAACGCTTCATTCTCATCATCGTCCTAATTATAAATCGAAAATGTAAATTATTGGATCTATATATATATTACATAATAATCTTTAACTATTATTTGATAATTATTAAACAATAAAAATAGCACTTTGTGTTTCCTTTTCTTCTTGTTTTAAAAAAAAAAAGATTTCTTCATTATTTTCATTTAACAATGTTTATTTTATCCCCCTTCATAGATAATTACATAGAGTTAGTCATTTTTCCACTCTCTAAGTGTTATCTTGATATTTTGATTTAGATTTTATCAGTTTAATTGTCCTCTGTTTCATATTGTCAATTTATTTCATTCTGATATGTTTATGTTATATCTTGTGGTCGAATGGATACCCAATTAATGTGTGACGTGATAAGACCTTCAATTAGAGAGCAGTGAATTATCGATTGGAATAATGACACACG AAAACCTTACGAGCAGTCTAGAGCGCTTATCGATCCTGCTTCTGCCTAGTCACTATTATTATCAGGACACAACAGTTTATTATTATTATCATTGAAAATTTACCGCTCTCTTGTCTG ] [+] EMBL SM295 [ AATAATGACACACGNAAAACCTTACGAGCAGTCTAGAGCGCTTATCGANCCTGCTTCTGCCTAGTCACTATTATTATCAGGACACAACAGTTTATNATTATTATCATTGAAATTNTNCCGCTCTCTTGTCTGGTAATCACGAGAATATATATATGTCCANCATGGGAAGCGCTGTGAAGTTGTGGCTTNGTTTTTCCAAAACAACAATATNATCAATATGAAAAGGATAATTATTTGTTTANTCGTCTCATCAGNTACTTNNCCTNCCCCTCNCTTTTANTATGTNCCCTTATGAAATTNGGNTCTTCAAAATACATTACTTTTTTATTCCCCCTAATTTTAAAGGAAAAGTCT] consensusID : consensus_4556#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 205 fasta sequence [TTATGTCCGTTGCATTTCAAGCGGCAAATAATTAATTCACACGTCCCACTCTCATAAGATATTGTCCGTAATGGGAAATGGGATATTATTCCTAATGAATAGAACTATTCCTCCTTCTTTATGATTCTGTCGGCTCTTACCAATGTAAAACCCTCAAGATCAAGTTCCATGCTATCTATAGGCTGCGTCATCCAAGTTTCTCTGA] [+] EMBL CD165273 [TTATGTCCGTTGCATTTCAAGCGGCAAATAATTAATTCACACGTCCCACTCTCATAAGATATTGTCCGTAATGGGAAATGGGATATTATTCCTAATGAATAGAACTATTCCTCCTTCTTTATGATTCTGTCGGCTCTTACCAATGTAAAACCCTCAAGATCAAGTTCCATGCTATCTATAGGCTGCGTCATCCAAGTTTCTCTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4556#0 TAATTTTAATTGGATTGATCATTTTCGAATCTTTTCTACGACTTATATTACCAGCTAGAG 60 consensus_4556#1 ------------------------------------------------------------ consensus_4556#0 CATTTAAAATTGCACCTTCATTAAATTCATCTACTGTTTCATCATTATCATCTGATATGT 120 consensus_4556#1 ------------------------------------------------------------ consensus_4556#0 TTATTGTTAATAATGACAAAGTTGGTGATCGATCATCAACGCTTCATTCTCATCATCGTC 180 consensus_4556#1 ------------------------------------------------------------ consensus_4556#0 CTAATTATAAATCGAAAATGTAAATTATTGGATCTATATATATATTACATAATAATCTTT 240 consensus_4556#1 ------------------------------------------------------------ consensus_4556#0 AACTATTATTTGATAATTATTAAACAATAAAAATAGCACTTTGTGTTTCCTTTTCTTCTT 300 consensus_4556#1 ------------------------------------------------------------ consensus_4556#0 GTTTTAAAAAAAAAAAGATTTCTTCATTATTTTCATTTAACAATGTTTATTTTATCCCCC 360 consensus_4556#1 ------------------------------------------------------------ consensus_4556#0 TTCATAGATAATTACATAGAGTTAGTCATTTTTCCACTCTCTAAGTGTTATCTTGATATT 420 consensus_4556#1 ------------------------------------------------------------ consensus_4556#0 TTGATTTAGATTTTATCAGTTTAATTGTCCTCTGTTTCATATTGTCAATTTATTTCATTC 480 consensus_4556#1 ------------------------------------------------------------ consensus_4556#0 TGATATGTTTATGTTATATCTTGTGGTCGAATGGATACCCAATTAATGTGTGACGTGATA 540 consensus_4556#1 ------------------------------------------------------------ consensus_4556#0 AGACCTTCAATTAGAGAGCAGTGAATTATCGATTGGAATAATGACACACGAAAACCTTAC 600 consensus_4556#1 ------------------------------------------------------------ consensus_4556#0 GAGCAGTCTAGAGCGCTTATCGATCCTGCTTCTGCCTAGTCACTATTATTATCAGGACAC 660 consensus_4556#1 ------------------------------------------------------------ consensus_4556#0 AACAGTTTATTATTATTATCATTGAAAATTTACCGCTCTCTTGTCTGGTAATCACGAGAA 720 consensus_4556#1 ------------------------------------------------------------ consensus_4556#0 TATATATATGTCCANCATGGGAAGCGCTGTGAAGTTGTGGCTTNGTTTTTCCAAAACAAC 780 consensus_4556#1 -----TTATGTCCGTTGCATTTCAAGCGGCAAATAATTAATTCACACGTCCCACTCTCAT 55 ******* ** * ** * * * *** * consensus_4556#0 AATATNATCAATATGAAAAGGATAATTATTTGTTTANTCGTCTCATCAGNTACTTNNCCT 840 consensus_4556#1 AAGATATT--GTCCGTAATGGGAAATGGGATATTATTCCTAATGAATAGA-ACTATTCCT 112 ** ** * * * ** ** *** * ** * * * ** *** *** consensus_4556#0 NCCCCTCNCTTTTANTATGTNCCCTTATGAAATTNGGNTCTTCAAAATACATTACTTTTT 900 consensus_4556#1 CCTTCTTTATGATTCTGTCGGCTCTTACCAATGTAAAACCCTCAAGATCAAGTTCCATGC 172 * ** * * * * * **** ** * * **** ** * * * * consensus_4556#0 TATTCCCCCTAATTTTAAAGGAAAAGTCT---- 929 consensus_4556#1 TATCTATAGGCTGCGTCATCCAAGTTTCTCTGA 205 *** * * ** *** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||