These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_456#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 318 fasta sequence [GTACCGACGGCTCACGGAACTTGGATACAAAGTACGTCAATTTTTCATTGGTGTATTGGATATTGCAGGTTTTGAGATTTTCACTGAAAATGGTTTTGAACAAATTTGTATTAATTATACAAATGAACGTTTACAACAATTCTTCAACCATCATATGTTCGTCTTAGAACAAGAAGAATATAAACGTGAAAAAATTCAATGGACATTTATTGATTTCGGTATGGATTTACAAGCTTGTATAGATTTAATTGAAAAGCCCATGGGTATCTTATCCATTCTAGAAGAAGAATGTATCGTTCCCAAAGCTTCAGATCAAAC] [+] EMBL CD167258 [GTACCGACGGCTCACGGAACTTGGATACAAAGTACGTCAATTTTTCATTGGTGTATTGGATATTGCAGGTTTTGAGATTTTCACTGAAAATGGTTTTGAACAAATTTGTATTAATTATACAAATGAACGTTTACAACAATTCTTCAACCATCATATGTTCGTCTTAGAACAAGAAGAATATAAACGTGAAAAAATTCAATGGACATTTATTGATTTCGGTATGGATTTACAAGCTTGTATAGATTTAATTGAAAAGCCCATGGGTATCTTATCCATTCTAGAAGAAGAATGTATCGTTCCCAAAGCTTCAGATCAAAC] consensusID : consensus_456#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 177 fasta sequence [CTATCTCCGGACAAGCCGATTCCAGGGGGTGGATGCACTCAGGGTGGTGCTTTACGGAGGCTAGCCCCCTATCTCCGGACAAGCCGATTCCAGGGGGTGGATGCACTCAGGGTGGTGCTTTACGGAGGCTAGCCCCCTATCTCCGGACAAGCCGATTCCAGGGGGTGGATGCACTCA] [+] EMBL CD113230 [CTATCTCCGGACAAGCCGATTCCAGGGGGTGGATGCACTCAGGGTGGTGCTTTACGGAGGCTAGCCCCCTATCTCCGGACAAGCCGATTCCAGGGGGTGGATGCACTCAGGGTGGTGCTTTACGGAGGCTAGCCCCCTATCTCCGGACAAGCCGATTCCAGGGGGTGGATGCACTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_456#0 GTACCGACGGCTCACGGAACTTGGATACAAAGTACGTCAATTTTTCATTGGTGTATTGGA 60 consensus_456#1 ------------------------------------------------------------ consensus_456#0 TATTGCAGGTTTTGAGATTTTCACTGAAAATGGTTTTGAACAAATTTGTATTAATTATAC 120 consensus_456#1 -----------------------------CTATCTCCGGACAAGCCGATTCCAGG-GGGT 30 * * * **** * * consensus_456#0 AAATGAACGTTTACAACAATTCTTCAACCATCATATGTTCGTCTTAGAACAAGAAGAATA 180 consensus_456#1 GGATGCACTCAGGGTGGTGCTTTACGGAGGCTAGCCCCCTATCTCCGGACAAGCCGATTC 90 *** ** * * * * *** * ***** ** * consensus_456#0 TAAACG-TGAAAAAATTCAATGGACATTTATTGATTTCGGTATGGATTTACAAGCTTGTA 239 consensus_456#1 CAGGGGGTGGATGCACTCA--GGGTGGTGCTTTACGGAGGC-TAGCCCCCTATCTCCGGA 147 * * ** * * *** ** * ** * ** * * * * * consensus_456#0 TAGATTTAATTGAAAAGCCCATGGGTAT-CTTATCCATTCTAGAAGAAGAATGTATCGTT 298 consensus_456#1 CAAGCCGATTCCAGGGG---GTGGATGCACTCA--------------------------- 177 * * * * * *** * ** * consensus_456#0 CCCAAAGCTTCAGATCAAAC 318 consensus_456#1 -------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||