cluster # 456

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Schistosoma mansoni
cluster # 456 cluster # 456 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_456#0 length = 318 sequences # 1

consensus_456#1 length = 177 sequences # 1

consensusID : consensus_456#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 318
fasta sequence

                              [GTACCGACGGCTCACGGAACTTGGATACAAAGTACGTCAATTTTTCATTGGTGTATTGGATATTGCAGGTTTTGAGATTTTCACTGAAAATGGTTTTGAACAAATTTGTATTAATTATACAAATGAACGTTTACAACAATTCTTCAACCATCATATGTTCGTCTTAGAACAAGAAGAATATAAACGTGAAAAAATTCAATGGACATTTATTGATTTCGGTATGGATTTACAAGCTTGTATAGATTTAATTGAAAAGCCCATGGGTATCTTATCCATTCTAGAAGAAGAATGTATCGTTCCCAAAGCTTCAGATCAAAC]

[+] EMBL CD167258             [GTACCGACGGCTCACGGAACTTGGATACAAAGTACGTCAATTTTTCATTGGTGTATTGGATATTGCAGGTTTTGAGATTTTCACTGAAAATGGTTTTGAACAAATTTGTATTAATTATACAAATGAACGTTTACAACAATTCTTCAACCATCATATGTTCGTCTTAGAACAAGAAGAATATAAACGTGAAAAAATTCAATGGACATTTATTGATTTCGGTATGGATTTACAAGCTTGTATAGATTTAATTGAAAAGCCCATGGGTATCTTATCCATTCTAGAAGAAGAATGTATCGTTCCCAAAGCTTCAGATCAAAC]




>consensus_456#0
GTACCGACGGCTCACGGAACTTGGATACAAAGTACGTCAATTTTTCATTGGTGTATTGGA
TATTGCAGGTTTTGAGATTTTCACTGAAAATGGTTTTGAACAAATTTGTATTAATTATAC
AAATGAACGTTTACAACAATTCTTCAACCATCATATGTTCGTCTTAGAACAAGAAGAATA
TAAACGTGAAAAAATTCAATGGACATTTATTGATTTCGGTATGGATTTACAAGCTTGTAT
AGATTTAATTGAAAAGCCCATGGGTATCTTATCCATTCTAGAAGAAGAATGTATCGTTCC
CAAAGCTTCAGATCAAAC

consensusID : consensus_456#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 177
fasta sequence

                              [CTATCTCCGGACAAGCCGATTCCAGGGGGTGGATGCACTCAGGGTGGTGCTTTACGGAGGCTAGCCCCCTATCTCCGGACAAGCCGATTCCAGGGGGTGGATGCACTCAGGGTGGTGCTTTACGGAGGCTAGCCCCCTATCTCCGGACAAGCCGATTCCAGGGGGTGGATGCACTCA]

[+] EMBL CD113230             [CTATCTCCGGACAAGCCGATTCCAGGGGGTGGATGCACTCAGGGTGGTGCTTTACGGAGGCTAGCCCCCTATCTCCGGACAAGCCGATTCCAGGGGGTGGATGCACTCAGGGTGGTGCTTTACGGAGGCTAGCCCCCTATCTCCGGACAAGCCGATTCCAGGGGGTGGATGCACTCA]




>consensus_456#1
CTATCTCCGGACAAGCCGATTCCAGGGGGTGGATGCACTCAGGGTGGTGCTTTACGGAGG
CTAGCCCCCTATCTCCGGACAAGCCGATTCCAGGGGGTGGATGCACTCAGGGTGGTGCTT
TACGGAGGCTAGCCCCCTATCTCCGGACAAGCCGATTCCAGGGGGTGGATGCACTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_456#0      GTACCGACGGCTCACGGAACTTGGATACAAAGTACGTCAATTTTTCATTGGTGTATTGGA 60
consensus_456#1      ------------------------------------------------------------
                                                                                 

consensus_456#0      TATTGCAGGTTTTGAGATTTTCACTGAAAATGGTTTTGAACAAATTTGTATTAATTATAC 120
consensus_456#1      -----------------------------CTATCTCCGGACAAGCCGATTCCAGG-GGGT 30
                                                   *   *  * ****     *   *       

consensus_456#0      AAATGAACGTTTACAACAATTCTTCAACCATCATATGTTCGTCTTAGAACAAGAAGAATA 180
consensus_456#1      GGATGCACTCAGGGTGGTGCTTTACGGAGGCTAGCCCCCTATCTCCGGACAAGCCGATTC 90
                       *** **            * * *       *        ***  * *****  ** * 

consensus_456#0      TAAACG-TGAAAAAATTCAATGGACATTTATTGATTTCGGTATGGATTTACAAGCTTGTA 239
consensus_456#1      CAGGGGGTGGATGCACTCA--GGGTGGTGCTTTACGGAGGC-TAGCCCCCTATCTCCGGA 147
                      *   * ** *   * ***  **    *  ** *    **  * *      *     * *

consensus_456#0      TAGATTTAATTGAAAAGCCCATGGGTAT-CTTATCCATTCTAGAAGAAGAATGTATCGTT 298
consensus_456#1      CAAGCCGATTCCAGGGG---GTGGATGCACTCA--------------------------- 177
                      *     * *  *   *    *** *   ** *                           

consensus_456#0      CCCAAAGCTTCAGATCAAAC 318
consensus_456#1      --------------------