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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4573#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence
[TTACATAAAATAGAAACTTAGGATAATCTTAGTTGTTGTAATCACACTTTATGGACGTACGTGAATATATGGTTTGATAAGTGGCTTTTGTGGTTTTCGTACAAGCATAAAATTATGCTTCTTTCTCTAACGTCCTACTTACAATGACTTACAGTACTGAGTAATTGCTAACTGTTTCAAAATATTTACACTTTCACGGAAAAGATGAACTCCCCAAAAATTATATAATCTCTTACAGTCTCATAAAAAAAGAACAGTAAACTTGNCATAGATGATCACGAGGATAAGCCATATTGGAAAATTGGTATTTCAAATGTGCTACCCATTCTGAAGGAGACATACGACCTGTATCAACATCTTGACGGTTAATAGTCATCGGTTGGCATTTAAAATGCAGCATATCTACCTCGTCATCGTTATCATCTAATTGATTGCGACCACTATTAGATTTTAACCGACAATTTGGAGTTGGTATGAGACCATGGAATCGTCCAAAAAAATATTGATGGTCCTGGAATATCGCTGTGCACCAGTTGTTGTGGAGTAAGAGCCAGGAGAATTATCATTATTATTATGAACTATAATATTATTATCACTACAATTACGTGATCGATGTTCTGGTAATGTACTTGTATCATTTATCTCATCAGTATTTAGTGAATCTGGTTCATT]
[+] EMBL CD127153 [TTACATAAAATAGAAACTTAGGATAATCTTAGTTGTTGTAATCACACTTTATGGACGTACGTGAATATATGGTTTGATAAGTGGCTTTTGTGGTTTTCGTACAAGCATAAAATTATGCTTCTTTCTCTAACGTCCTACTTACAATGACTTACAGTACTGAGTAATTGCTAACTGTTTCAAAATATTTACACTTTCACGGAAAAGATGAACTCCCCAAAAATTATATAATCTCTTACAGTCTCATAAAAAAAGAACAGTAAACTTGNCATAGATGATCACGAGGATAAGCCATATTGGAAAATTGGTATTTCAAATGTGCTACCCATTCTGAAGGAGACATACGACCTGTATCAACATCTTGACGGTTAATAGTCATCGGTTGGCATTTAAAATGCAGCATATCTACCTCGTCATCGTTATCATCTAATTGATTGCGACCACTATTAGATTTTAACCGACAATTTGGAGTTGGTATGAGACCATGGAATCGTCCAAAAAAATATTGATGGTCCTGGAATATCGCTGTGCACCAGTTGTTGTGGAGTAAGAGCCAGGAGAATTATCATTATTATTATGAACTATAATATTATTATCACTACAATTACGTGATCGATGTTCTGGTAATGTACTTGTATCATTTATCTCATCAGTATTTAGTGAATCTGGTTCATT]
consensusID : consensus_4573#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 585 fasta sequence
[TGTGAACCGGAAGTTATCCTTGAAGGACTATCTACATCTATATGAGAAAAATATAAATTCCCATGTAATTTTATAGCAGGCTCATTTGAAAGAGATCTTGTTGTGCAATCGGATCCTGGTAATGACGATGTAGAAGGGCATGGGAAATGAAATAGTTCAAATGATTCCAATTTTATATTTTGTGTCCTCGGTTCATTTGCTTTCTTTGTTGTCGCTGTTGTCGTTATGGTTTGACTAGGAAATAAACACTCTGATAAGTGAACTCCAAAAAGTTGGATATTAAAGCATAACTGAGTGGAAGAGTAGTATTGATTTATAGATCGACTATTTGGTATAACCAAATAATTATTAGAAAGTTCCACATGCCATAAACCACCGACGAAACATAGATGATCACGAGGATAAGCCATATTGGAAAATTGGTATTTCAAATGTGCTACCCATTCTGAAGGAGACATACGACCTGTATCAACATCTTGACGGTTAATAGTCATCGGTTGGCATTTAAAATGCAGCATATCTACCTCGTCATCGTTATCATCTAATTGATTGCGACCACTATTAGATTTTAACCGANCATTTGNA]
[+] EMBL CD068158 [TGTGAACCGGAAGTTATCCTTGAAGGACTATCTACATCTATATGAGAAAAATATAAATTCCCATGTAATTTTATAGCAGGCTCATTTGAAAGAGATCTTGTTGTGCAATCGGATCCTGGTAATGACGATGTAGAAGGGCATGGGAAATGAAATAGTTCAAATGATTCCAATTTTATATTTTGTGTCCTCGGTTCATTTGCTTTCTTTGTTGTCGCTGTTGTCGTTATGGTTTGACTAGGAAATAAACACTCTGATAAGTGAACTCCAAAAAGTTGGATATTAAAGCATAACTGAGTGGAAGAGTAGTATTGATTTATAGATCGACTATTTGGTATAACCAAATAATTATTAGAAAGTTCCACATGCCATAAACCACCGACGAAACATAGATGATCACGAGGATAAGCCATATTGGAAAATTGGTATTTCAAATGTGCTACCCATTCTGAAGGAGACATACGACCTGTATCAACATCTTGACGGTTAATAGTCATCGGTTGGCATTTAAAATGCAGCA ]
[+] EMBL CD181206 [ tAACCACCGACGAAACATAGATGATCACGAGGATAAGCCATATTGGAAAATTGGTATTTCAAATGTGCTACCCATTCTGAAGGAGACATACGACCTGTATCAACATCTTGACGGTTAATAGTCATCGGTTGGCATTTAAAATGCAGCATATCTACCTCGTCATCGTTATCATCTAATTGATTGCGACCACTATTAGATTTTAACCGANCATTTGNA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4573#0 ------------------------------------------------------------
consensus_4573#1 TGTGAACCGGAAGTTATCCTTGAAGGACTATCTACATCTATATGAGAAAAATATAAATTC 60
consensus_4573#0 ---------------------TTACATAAAATAGAAACT-TAGGATAATCTTAGTTGTTG 38
consensus_4573#1 CCATGTAATTTTATAGCAGGCTCATTTGAAAGAGATCTTGTTGTGCAATCGGA-TCCTGG 119
* * * *** *** * * * **** * * * *
consensus_4573#0 TAATCACACTTTATGGACGTACGTGAAT--ATATGGTTTGATAAGTGGCTTTTGTGGTTT 96
consensus_4573#1 TAATGACGATGTAGAAGGGCATGGGAAATGAAATAGTTCAAATGATTCCAATTTTATATT 179
**** ** * ** * * * *** * ** *** * * * ** * **
consensus_4573#0 TCGTACAAGCATAAAATTATGCTTCTTTCTCTAACGTCCTACTTACAATGACTTAC---A 153
consensus_4573#1 TTGTGTCCTCGGTTCATT-TGCTTTCTTTGTTGTCGCTGTTGTCGTTATGGTTTGACTAG 238
* ** * *** ***** ** * ** * * *** **
consensus_4573#0 GTACTGAGTAAT-TGCTAACTG--TTTCAAAATATT-----------TACACTTTCACGG 199
consensus_4573#1 GAAATAAACACTCTGATAAGTGAACTCCAAAAAGTTGGATATTAAAGCATAACTGAGTGG 298
* * * * * * ** *** ** * ***** ** * * * **
consensus_4573#0 AAAAG------------ATGAACTCCCCA------AAAATTATATAATCTCTT-ACAGTC 240
consensus_4573#1 AAGAGTAGTATTGATTTATAGATCGACTATTTGGTATAACCAAATAATTATTAGAAAGTT 358
** ** ** * * * * ** * ***** * * ***
consensus_4573#0 TCATAAAAAAAGAACAGTAAACTTGNCATAGATGATCACGAGGATAAGCCATATTGGAAA 300
consensus_4573#1 CCACATGCCATAAACCACCGACGAAACATAGATGATCACGAGGATAAGCCATATTGGAAA 418
** * * *** ** **********************************
consensus_4573#0 ATTGGTATTTCAAATGTGCTACCCATTCTGAAGGAGACATACGACCTGTATCAACATCTT 360
consensus_4573#1 ATTGGTATTTCAAATGTGCTACCCATTCTGAAGGAGACATACGACCTGTATCAACATCTT 478
************************************************************
consensus_4573#0 GACGGTTAATAGTCATCGGTTGGCATTTAAAATGCAGCATATCTACCTCGTCATCGTTAT 420
consensus_4573#1 GACGGTTAATAGTCATCGGTTGGCATTTAAAATGCAGCATATCTACCTCGTCATCGTTAT 538
************************************************************
consensus_4573#0 CATCTAATTGATTGCGACCACTATTAGATTTTAACCGACAATTTGGAGTTGGTATGAGAC 480
consensus_4573#1 CATCTAATTGATTGCGACCACTATTAGATTTTAACCGANCATTTGNA------------- 585
************************************** ***** *
consensus_4573#0 CATGGAATCGTCCAAAAAAATATTGATGGTCCTGGAATATCGCTGTGCACCAGTTGTTGT 540
consensus_4573#1 ------------------------------------------------------------
consensus_4573#0 GGAGTAAGAGCCAGGAGAATTATCATTATTATTATGAACTATAATATTATTATCACTACA 600
consensus_4573#1 ------------------------------------------------------------
consensus_4573#0 ATTACGTGATCGATGTTCTGGTAATGTACTTGTATCATTTATCTCATCAGTATTTAGTGA 660
consensus_4573#1 ------------------------------------------------------------
consensus_4573#0 ATCTGGTTCATT 672
consensus_4573#1 ------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||