These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4602#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 646 fasta sequence [CCTCGAGGCCANAATTCGGCACGAGGATTTTAACAGAAACTGTAATGACTGAAAACTATGAGTACATGCCGCGAGCGAGGCCGGACCCTGATGTCGAATATCCTTTGACAATTAAGTATTGTGGTGAATGCACTATGCCTCTGGAGTATTGTGAATTTTCACCATTTCCTGATAAGTGTCGAGCATGGCTAGAGAAAAATTTACCTGAAGAGTTTGAACGACTTAATACCGATGATATGGATTCAAACCAAACTGAGGCAGCGCCTAAAGGACGTCAAGTTAGGGGTGGAAAGGGAGGACCTAAAAAACCAGTAAAGCAGCAAATAGCAGTATTTAAAACTTCCAGAGGCAAGAAAAAATATACGACTAGTGTCACTGGATTGTCCACATTTGGGATTGATCTGAAAGCAGCTTCGAAGATATTTGGTCACAAATTCGCAACCGGTAGTTCAGTAACGGGTAATGGTGATGAAATTGTAATTCAAGGAGATGTAAAAGACGAGCTAATTAATGTATTAATAGAAAAATGGCCAGAAATTGATAAAGACGTAATAGAGAATCTTGGGGAAATGAAACGATAAACTTAATTCGTTATTTTGGTGTACAGTGTTGTAATTAATCTTCTTGCTTTGAAAATACAACCCTT] [+] EMBL CD080218 [CCTCGAGGCCANAATTCGGCACGAGGATTTTAACAGAAACTGTAATGACTGAAAACTATGAGTACATGCCGCGAGCGAGGCCGGACCCTGATGTCGAATATCCTTTGACAATTAAGTATTGTGGTGAATGCACTATGCCTCTGGAGTATTGTGAATTTTCACCATTTCCTGATAAGTGTCGAGCATGGCTAGAGAAAAATTTACCTGAAGAGTTTGAACGACTTAATACCGATGATATGGATTCAAACCAAACTGAGGCAGCGCCTAAAGGACGTCAAGTTAGGGGTGGAAAGGGAGGACCTAAAAAACCAGTAAAGCAGCAAATAGCAGTATTTAAAACTTCCAGAGGCAAGAAAAAATATACGACTAGTGTCACTGGATTGTCCACATTTGGGATTGATCTGAAAGCAGCTTCGAAGATATTTGGTCACAAATTCGCAACCGGTAGTTCAGTAACGGGTAATGGTGATGAAATTGTAATTCAAGGAGATGTAAAAGACGAGCTAATTAATGTATTAATAGAAAAATGGCCAGAAATTGATAAAGACGTAATAGAGAATCTTGGGGAAATGAAACGATAAACTTAATTCGTTATTTTGGTGTACAGTGTTGTAATTAATCTTCTTGCTTTGAAAATACAACCCTT] [+] EMBL CD079839 [ GTCTGAACGACTTAATACCGATGATATGGATTCAAACCAAACTGAGGCAGCGCCTAAAGGACGTCAAGTTAGGGGTGGAAAGGGAGGACCTAAAAAACCAGTAAAGCAGCAAATAGCAGTATTTAAAACTTCCAGAGGCAAGAAAAAATATACGACTAGTGTCACTGGATTGTCCACATTTGGGATTGATCTGAAAGCAGCTTCGAAGATATTTGGTCACAAATTCGCAACCGGTAGTTCAGTAACGGGTAATGGTGATGAAATTGTAATTCAAGGAGATGTAAAAGACGAGCTAATTAATGTATTAATAGAAAAATGGCCAGAAATTGATAAAGACGTAATAGAGAATCTTGGGGAAATGAAACGATAAACTTAATTCGTTATTTTGGTGTACAGTGTTGTAATTAATCTTCTTGCTTTGAAAATACAACCCTT] consensusID : consensus_4602#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 166 fasta sequence [TTCAAAGTAATAATTACGTTTTTGGCTGTCAATCGATCGACTTCCAACGTCTAAATCAAAAGCACTTATACCAGACGCTAATTTCATATTTTTTGTTGTTTTAGTTCAGTTTTATTTTAACAGAAACTGTAATGACTGAAAACTATGAGTACATGCCGCGAGCGAG] [+] EMBL CD192503 [TTCAAAGTAATAATTACGTTTTTGGCTGTCAATCGATCGACTTCCAACGTCTAAATCAAAAGCACTTATACCAGACGCTAATTTCATATTTTTTGTTGTTTTAGTTCAGTTTTATTTTAACAGAAACTGTAATGACTGAAAACTATGAGTACATGCCGCGAGCGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4602#0 CCTCGAGGCCANAATTCGGCACGAGGATTTTAACAGA---AACTGTAATGACTGAAAACT 57 consensus_4602#1 -TTCAAAGTAATAATTACGTTTTTGGCTGTCAATCGATCGACTTCCAACGTCT--AAATC 57 ** * * * **** * ** * * ** ** * * ** * ** *** consensus_4602#0 ATGAGTACATGCCGCGAGCGAGGCCGGACCCTGATGTCGAATATCCTTTGACAATTAAGT 117 consensus_4602#1 AAAAGCACTTAT----------ACCAGACGCTAATTTC--ATATTTTTTGTTGTTTTAGT 105 * ** ** * ** *** ** ** ** **** **** ** *** consensus_4602#0 ATTGTGGTGAATGCACTATGCCTCTGGAGTATTGTGAATTTTCACCATTTCCTGATAAGT 177 consensus_4602#1 TCAGTTTTATTTTAACAGAAACTGTAATG-ACTGAAAACTATGAGTACATGCCG-CGAGC 163 ** * * ** ** * * * ** ** * * * * * * * ** consensus_4602#0 GTCGAGCATGGCTAGAGAAAAATTTACCTGAAGAGTTTGAACGACTTAATACCGATGATA 237 consensus_4602#1 GAG--------------------------------------------------------- 166 * consensus_4602#0 TGGATTCAAACCAAACTGAGGCAGCGCCTAAAGGACGTCAAGTTAGGGGTGGAAAGGGAG 297 consensus_4602#1 ------------------------------------------------------------ consensus_4602#0 GACCTAAAAAACCAGTAAAGCAGCAAATAGCAGTATTTAAAACTTCCAGAGGCAAGAAAA 357 consensus_4602#1 ------------------------------------------------------------ consensus_4602#0 AATATACGACTAGTGTCACTGGATTGTCCACATTTGGGATTGATCTGAAAGCAGCTTCGA 417 consensus_4602#1 ------------------------------------------------------------ consensus_4602#0 AGATATTTGGTCACAAATTCGCAACCGGTAGTTCAGTAACGGGTAATGGTGATGAAATTG 477 consensus_4602#1 ------------------------------------------------------------ consensus_4602#0 TAATTCAAGGAGATGTAAAAGACGAGCTAATTAATGTATTAATAGAAAAATGGCCAGAAA 537 consensus_4602#1 ------------------------------------------------------------ consensus_4602#0 TTGATAAAGACGTAATAGAGAATCTTGGGGAAATGAAACGATAAACTTAATTCGTTATTT 597 consensus_4602#1 ------------------------------------------------------------ consensus_4602#0 TGGTGTACAGTGTTGTAATTAATCTTCTTGCTTTGAAAATACAACCCTT 646 consensus_4602#1 ------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||