These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4608#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 238 fasta sequence [GTCATTCANCACTGAGCATCCGCCAACCAGCCTCATCGCATTCCAAACTAGGATCAACCACACTCGCGACAGACCATTCACACATATATCACTGAGACGGCATTCGATGATGTGTGTGTCAAACTTCAACAATTCCATGAAGTTCACTGACCGTTCATCTATTGTCTTCAGTCAGTTGATATCTCACAACAGACTTGGTTTGAGCTCCACTGGTCACTGCTTATCAATACAACTGCGT] [+] EMBL CD086514 [GTCATTCANCACTGAGCATCCGCCAACCAGCCTCATCGCATTCCAAACTAGGATCAACCACACTCGCGACAGACCATTCACACATATATCACTGAGACGGCATTCGATGATGTGTGTGTCAAACTTCAACAATTCCATGAAGTTCACTGACCGTTCATCTATTGTCTTCAGTCAGTTGATATCTCACAACAGACTTGGTTTGAGCTCCACTGGTCACTGCTTATCAATACAACTGCGT] [-] EMBL CD086933 [ tttgAAATTAGGATCGACCACACTGGCAAAAGACCATTCACACATATATCACTGAGCCGGCATTCGATGATGTGTGTGTCTAACTTCAACAATTCCATGAAGTTCACTGACCGTTCATCTATTGTCTTGAGTCAGTTGATATCTCACAACAGACGTG ] consensusID : consensus_4608#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 203 fasta sequence [AGTGTCATTCAGCAGTGAGCATCCACCAACTCGTATCATCGCATTCCAGACTGGTATCAACCAATCTCGCGACAGACCATTCACACATATATCACTGAGACGGCATNCGATGGNGTGTATGTCAAACTCCAACANTTCCATGAAGTTCACTGACCGTTTCATCTATTGTCTTGAGTCAGTNGATATCTCACAACAGACGTGGT] [+] EMBL SMRAP110 [AGTGTCATTCAGCAGTGAGCATCCACCAACTCGTATCATCGCATTCCAGACTGGTATCAACCAATCTCGCGACAGACCATTCACACATATATCACTGAGACGGCATNCGATGGNGTGTATGTCAAACTCCAACANTTCCATGAAGTTCACTGACCGTTTCATCTATTGTCTTGAGTCAGTNGATATCTCACAACAGACGTGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4608#0 ---GTCATTCANCACTGAGCATCCGCCAACCAGCCTCATCGCATTCCAAACTAGGATCAA 57 consensus_4608#1 AGTGTCATTCAGCAGTGAGCATCCACCAACTCGTATCATCGCATTCCAGACTGGTATCAA 60 ******** ** ********* ***** * ************* *** * ***** consensus_4608#0 CCACACTCGCGACAGACCATTCACACATATATCACTGAGACGGCATTCGATGATGTGTGT 117 consensus_4608#1 CCAATCTCGCGACAGACCATTCACACATATATCACTGAGACGGCATNCGATGGNGTGTAT 120 *** ***************************************** ***** **** * consensus_4608#0 GTCAAACTTCAACAATTCCATGAAGTTCACTGACCGTT-CATCTATTGTCTTCAGTCAGT 176 consensus_4608#1 GTCAAACTCCAACANTTCCATGAAGTTCACTGACCGTTTCATCTATTGTCTTGAGTCAGT 180 ******** ***** *********************** ************* ******* consensus_4608#0 TGATATCTCACAACAGACTTGGTTTGAGCTCCACTGGTCACTGCTTATCAATACAACTGC 236 consensus_4608#1 NGATATCTCACAACAGACGTGGT------------------------------------- 203 ***************** **** consensus_4608#0 GT 238 consensus_4608#1 -- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||