These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4609#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 593 fasta sequence [TGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTGAAGGTGAGACGGAAGCCGAGTCGSAGTTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACCGAGAAAGTGAAGTGGTAGAACAGGTTGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGATTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGAACGATTGGTTGAGCGTGTCGGGGYTTGNNAAAGAGRAAATTTKGGGGAAGGGCGGAAWTGGTGAAGGTTTGGTTGAAGGCGGTAMTTTGAAGGGTGAGACGGGAAGCCGGAGTCGGAGGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACCGAGAAAAGTGAAGTGGTAGAACAGGTTGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGATTCTGAGGCGCTTGCAGAGACTGCAGCACANCGGGANGGAAACGATTGGTTGANCGTGTCGGTGAGATGGAGGCGGAATATGGTGAGTTGGTGAAGGCGWTTTGAAGGTGAGACGGAAGCCGAKTCGN] [+] EMBL SM1247328 [TGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTGAAGGTGAGACGGAAGCCGAGTCGSAGTTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACCGAGAAAGTGAAGTGGTAGAACAGGTTGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGATTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGAACGATTGGTTGAGCGTGTCGGGGYTTGNNAAAGAGRAAATTTKGGGGAAGGGCGGAAWTGGTGAAGGTTTGGTTGAAGGCGGTAMTTTGAAGGGTGAGACGGGAAGCCGGAGTCGGAGGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACCGAGAAAAGTGAAGTGGTAGAACAGGTTGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGATTCTGAGGCGCTTGCAGAGACTGCAGCACANCGGGANGGAAACGATTGGTTGANCGTGTCGGTGAGATGGAGGCGGAATATGGTGAGTTGGTGAAGGCGWTTTGAAGGTGAGACGGAAGCCGAKTCGN] consensusID : consensus_4609#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 225 fasta sequence [CGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGAAGCCGAGTCGGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACGCAGAAAGTGAAG] [+] EMBL CD059397 [CGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGAAGCCGAGTCGGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACGCAGAAAGTGAAG] consensusID : consensus_4609#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 130 fasta sequence [ACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACGCAGAAAGT] [+] EMBL CD059599 [ACGATTGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGCAGTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACGCAGAAAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4609#1 ------------------------------------------------------------ consensus_4609#2 ------------------------------------------------------------ consensus_4609#0 TGGTTGAGCGTGTCGGTGAGATGGAGGCGGAATATGGTGAAGTTGGTGAAGGCGTATTGA 60 consensus_4609#1 ------------------------------------------------------------ consensus_4609#2 ------------------------------------------------------------ consensus_4609#0 AGGTGAGACGGAAGCCGAGTCGSAGTTCGAAGTGTTCGGTGAGACATTGGGGCAAGTTGA 120 consensus_4609#1 --------------------------------------CGGAACGTGTGTCTGTGTTCGC 22 consensus_4609#2 ------------------------------------------------------------ consensus_4609#0 AGCGGACCGAGAAAGTGAAGTGGTAGAACAGGTTGAATCGGAACGTGTGTCTGTGTTCGC 180 consensus_4609#1 TCCAGTCGAATTGGAGTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGGGAACG 82 consensus_4609#2 ---------------------------------------------------------ACG 3 consensus_4609#0 TCCAGTCGAATTGGATTCTGAGGCGCTTGCAGAGACTGCAGCACAACCGGAACGG-AACG 239 *** consensus_4609#1 ATTGGTTGAGCGTGTCGG----TGAGATGGAGGC------GGAATATGGTGAAGTTGGTG 132 consensus_4609#2 ATTGGTTGAGCGTGTCGG----TGAGATGGAGGC------GGAATATGGTGAAGTTGGTG 53 consensus_4609#0 ATTGGTTGAGCGTGTCGGGGYTTGNNAAAGAGRAAATTTKGGGGAAGGGCGGAAWTGGTG 299 ****************** ** * *** ** * ** * * ***** consensus_4609#1 AAGGCGTATTTGAAGG---------------TGAGACGGAAGCC--GAGTCGGCAGTCGA 175 consensus_4609#2 AAGGCGTATTTGAAGG---------------TGAGACGG--------------CAGTCGA 84 consensus_4609#0 AAGGTTTGGTTGAAGGCGGTAMTTTGAAGGGTGAGACGGGAAGCCGGAGTCGGAGGTCGA 359 **** * ******* ******** ***** consensus_4609#1 AGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACGCAGAAA-GTGAAG--------- 225 consensus_4609#2 AGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACGCAGAAA-GT------------- 130 consensus_4609#0 AGTGTTCGGTGAGACATTGGGGCAAGTTGAAGCGGACCGAGAAAAGTGAAGTGGTAGAAC 419 ************************************* ***** ** consensus_4609#1 ------------------------------------------------------------ consensus_4609#2 ------------------------------------------------------------ consensus_4609#0 AGGTTGAATCGGAACGTGTGTCTGTGTTCGCTCCAGTCGAATTGGATTCTGAGGCGCTTG 479 consensus_4609#1 ------------------------------------------------------------ consensus_4609#2 ------------------------------------------------------------ consensus_4609#0 CAGAGACTGCAGCACANCGGGANGGAAACGATTGGTTGANCGTGTCGGTGAGATGGAGGC 539 consensus_4609#1 ------------------------------------------------------ consensus_4609#2 ------------------------------------------------------ consensus_4609#0 GGAATATGGTGAGTTGGTGAAGGCGWTTTGAAGGTGAGACGGAAGCCGAKTCGN 593 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||