These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_461#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 398 fasta sequence [ATTTATACATAAAAATTGTAATGGAGAAGATCACTGAAATGAAGTTTTATTGGACATTCAATGTTCGATTAACATGAATATCCCACTTATTCACCAGGATATTATCGATCAGTGTTATGTTTCATGTTTCTTTGAACACTCGAAGCACAGTGTACTATTCTAGTTTTGAGATGGTGAAATGATATCCAATCGACAATGATACTCATAATGATGACACGAACATGGGCAAATTACATAATTGTGTGTTTATCTATTTTGACTTTAGTGGTCTTAACAGATGAATGTTGGTCATTTGAATAATTGATGCATAGATCGTTGTGCGTTGACCTTCATTCATCTGTTCCATCTCACTTTCATTGCTTTCAACAGTATGTTGCCTCCGTAATTCTGATGATTTC] [+] EMBL CD074821 [ATTTATACATAAAAATTGTAATGGAGAAGATCACTGAAATGAAGTTTTATTGGACATTCAATGTTCGATTAACATGAATATCCCACTTATTCACCAGGATATTATCGATCAGTGTTATGTTTCATGTTTCTTTGAACACTCGAAGCACAGTGTACTATTCTAGTTTTGAGATGGTGAAATGATATCCAATCGACAATGATACTCATAATGATGACACGAACATGGGCAAATTACATAATTGTGTGTTTATCTATTTTGACTTTAGTGGTCTTAACAGATGAATGTTGGTCATTTGAATAATTGATGCATAGATCGTTGTGCGTTGACCTTCATTCATCTGTTCCATCTCACTTTCATTGCTTTCAACAGTATGTTGCCTCCGTAATTCTGATGATTTC] consensusID : consensus_461#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 373 fasta sequence [TTTATACATAAAAATTGTAATGGNNNNNNNNNNNNNNNNNNNNNNTTATTGGACATTCAATGTTCGATTAACATGAATATCCCACTTATTCACCAGGATATTATCGATCAGTGTTATGTTTCATGTTTCTTTGAACACTCGAAGCACAGTGTACTATTCTAGTTTTGAGATGGTGAAANNNNNNNNNNNNNNNNNNNNNNNNCATAATGATGACACGAACATGGGCAAATTACATAATTGTGTGTTTATCTATTTTGACTTTAGTGGTCTTAACAGATGAATGTTGGTCATTTGAATAATTGATGCATAGATCGTTGTGCGTTGACCTTCTGCTTTCAACAGTATGTTGCCTCCGTAATTCTGATGATTTCAC] [-] EMBL CD080995 [TTTATACATAAAAATTGTAATGGNNNNNNNNNNNNNNNNNNNNNNTTATTGGACATTCAATGTTCGATTAACATGAATATCCCACTTATTCACCAGGATATTATCGATCAGTGTTATGTTTCATGTTTCTTTGAACACTCGAAGCACAGTGTACTATTCTAGTTTTGAGATGGTGAAANNNNNNNNNNNNNNNNNNNNNNNNCATAATGATGACACGAACATGGGCAAATTACATAATTGTGTGTTTATCTATTTTGACTTTAGTGGTCTTAACAGATGAATGTTGGTCATTTGAATAATTGATGCATAGATCGTTGTGCGTTGACCTTCTGCTTTCAACAGTATGTTGCCTCCGTAATTCTGATGATTTCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_461#0 ATTTATACATAAAAATTGTAATGGAGAAGATCACTGAAATGAAGTTTTATTGGACATTCA 60 consensus_461#1 -TTTATACATAAAAATTGTAATGGNNNNNNNNNNNNNNNNNNNNNNTTATTGGACATTCA 59 *********************** ************** consensus_461#0 ATGTTCGATTAACATGAATATCCCACTTATTCACCAGGATATTATCGATCAGTGTTATGT 120 consensus_461#1 ATGTTCGATTAACATGAATATCCCACTTATTCACCAGGATATTATCGATCAGTGTTATGT 119 ************************************************************ consensus_461#0 TTCATGTTTCTTTGAACACTCGAAGCACAGTGTACTATTCTAGTTTTGAGATGGTGAAAT 180 consensus_461#1 TTCATGTTTCTTTGAACACTCGAAGCACAGTGTACTATTCTAGTTTTGAGATGGTGAAAN 179 *********************************************************** consensus_461#0 GATATCCAATCGACAATGATACTCATAATGATGACACGAACATGGGCAAATTACATAATT 240 consensus_461#1 NNNNNNNNNNNNNNNNNNNNNNNCATAATGATGACACGAACATGGGCAAATTACATAATT 239 ************************************* consensus_461#0 GTGTGTTTATCTATTTTGACTTTAGTGGTCTTAACAGATGAATGTTGGTCATTTGAATAA 300 consensus_461#1 GTGTGTTTATCTATTTTGACTTTAGTGGTCTTAACAGATGAATGTTGGTCATTTGAATAA 299 ************************************************************ consensus_461#0 TTGATGCATAGATCGTTGTGCGTTGACCTTCATTCATCTGTTCCATCTCACTTTCATTGC 360 consensus_461#1 TTGATGCATAGATCGTTGTGCGTTGACCTTC--------------------------TGC 333 ******************************* *** consensus_461#0 TTTCAACAGTATGTTGCCTCCGTAATTCTGATGATTTC-- 398 consensus_461#1 TTTCAACAGTATGTTGCCTCCGTAATTCTGATGATTTCAC 373 ************************************** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||