cluster # 461

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Schistosoma mansoni
cluster # 461 cluster # 461 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_461#0 length = 398 sequences # 1

consensus_461#1 length = 373 sequences # 1

consensusID : consensus_461#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 398
fasta sequence

                              [ATTTATACATAAAAATTGTAATGGAGAAGATCACTGAAATGAAGTTTTATTGGACATTCAATGTTCGATTAACATGAATATCCCACTTATTCACCAGGATATTATCGATCAGTGTTATGTTTCATGTTTCTTTGAACACTCGAAGCACAGTGTACTATTCTAGTTTTGAGATGGTGAAATGATATCCAATCGACAATGATACTCATAATGATGACACGAACATGGGCAAATTACATAATTGTGTGTTTATCTATTTTGACTTTAGTGGTCTTAACAGATGAATGTTGGTCATTTGAATAATTGATGCATAGATCGTTGTGCGTTGACCTTCATTCATCTGTTCCATCTCACTTTCATTGCTTTCAACAGTATGTTGCCTCCGTAATTCTGATGATTTC]

[+] EMBL CD074821             [ATTTATACATAAAAATTGTAATGGAGAAGATCACTGAAATGAAGTTTTATTGGACATTCAATGTTCGATTAACATGAATATCCCACTTATTCACCAGGATATTATCGATCAGTGTTATGTTTCATGTTTCTTTGAACACTCGAAGCACAGTGTACTATTCTAGTTTTGAGATGGTGAAATGATATCCAATCGACAATGATACTCATAATGATGACACGAACATGGGCAAATTACATAATTGTGTGTTTATCTATTTTGACTTTAGTGGTCTTAACAGATGAATGTTGGTCATTTGAATAATTGATGCATAGATCGTTGTGCGTTGACCTTCATTCATCTGTTCCATCTCACTTTCATTGCTTTCAACAGTATGTTGCCTCCGTAATTCTGATGATTTC]




>consensus_461#0
ATTTATACATAAAAATTGTAATGGAGAAGATCACTGAAATGAAGTTTTATTGGACATTCA
ATGTTCGATTAACATGAATATCCCACTTATTCACCAGGATATTATCGATCAGTGTTATGT
TTCATGTTTCTTTGAACACTCGAAGCACAGTGTACTATTCTAGTTTTGAGATGGTGAAAT
GATATCCAATCGACAATGATACTCATAATGATGACACGAACATGGGCAAATTACATAATT
GTGTGTTTATCTATTTTGACTTTAGTGGTCTTAACAGATGAATGTTGGTCATTTGAATAA
TTGATGCATAGATCGTTGTGCGTTGACCTTCATTCATCTGTTCCATCTCACTTTCATTGC
TTTCAACAGTATGTTGCCTCCGTAATTCTGATGATTTC

consensusID : consensus_461#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 373
fasta sequence

                              [TTTATACATAAAAATTGTAATGGNNNNNNNNNNNNNNNNNNNNNNTTATTGGACATTCAATGTTCGATTAACATGAATATCCCACTTATTCACCAGGATATTATCGATCAGTGTTATGTTTCATGTTTCTTTGAACACTCGAAGCACAGTGTACTATTCTAGTTTTGAGATGGTGAAANNNNNNNNNNNNNNNNNNNNNNNNCATAATGATGACACGAACATGGGCAAATTACATAATTGTGTGTTTATCTATTTTGACTTTAGTGGTCTTAACAGATGAATGTTGGTCATTTGAATAATTGATGCATAGATCGTTGTGCGTTGACCTTCTGCTTTCAACAGTATGTTGCCTCCGTAATTCTGATGATTTCAC]

[-] EMBL CD080995             [TTTATACATAAAAATTGTAATGGNNNNNNNNNNNNNNNNNNNNNNTTATTGGACATTCAATGTTCGATTAACATGAATATCCCACTTATTCACCAGGATATTATCGATCAGTGTTATGTTTCATGTTTCTTTGAACACTCGAAGCACAGTGTACTATTCTAGTTTTGAGATGGTGAAANNNNNNNNNNNNNNNNNNNNNNNNCATAATGATGACACGAACATGGGCAAATTACATAATTGTGTGTTTATCTATTTTGACTTTAGTGGTCTTAACAGATGAATGTTGGTCATTTGAATAATTGATGCATAGATCGTTGTGCGTTGACCTTCTGCTTTCAACAGTATGTTGCCTCCGTAATTCTGATGATTTCAC]




>consensus_461#1
TTTATACATAAAAATTGTAATGGNNNNNNNNNNNNNNNNNNNNNNTTATTGGACATTCAA
TGTTCGATTAACATGAATATCCCACTTATTCACCAGGATATTATCGATCAGTGTTATGTT
TCATGTTTCTTTGAACACTCGAAGCACAGTGTACTATTCTAGTTTTGAGATGGTGAAANN
NNNNNNNNNNNNNNNNNNNNNNCATAATGATGACACGAACATGGGCAAATTACATAATTG
TGTGTTTATCTATTTTGACTTTAGTGGTCTTAACAGATGAATGTTGGTCATTTGAATAAT
TGATGCATAGATCGTTGTGCGTTGACCTTCTGCTTTCAACAGTATGTTGCCTCCGTAATT
CTGATGATTTCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_461#0      ATTTATACATAAAAATTGTAATGGAGAAGATCACTGAAATGAAGTTTTATTGGACATTCA 60
consensus_461#1      -TTTATACATAAAAATTGTAATGGNNNNNNNNNNNNNNNNNNNNNNTTATTGGACATTCA 59
                      ***********************                      **************

consensus_461#0      ATGTTCGATTAACATGAATATCCCACTTATTCACCAGGATATTATCGATCAGTGTTATGT 120
consensus_461#1      ATGTTCGATTAACATGAATATCCCACTTATTCACCAGGATATTATCGATCAGTGTTATGT 119
                     ************************************************************

consensus_461#0      TTCATGTTTCTTTGAACACTCGAAGCACAGTGTACTATTCTAGTTTTGAGATGGTGAAAT 180
consensus_461#1      TTCATGTTTCTTTGAACACTCGAAGCACAGTGTACTATTCTAGTTTTGAGATGGTGAAAN 179
                     *********************************************************** 

consensus_461#0      GATATCCAATCGACAATGATACTCATAATGATGACACGAACATGGGCAAATTACATAATT 240
consensus_461#1      NNNNNNNNNNNNNNNNNNNNNNNCATAATGATGACACGAACATGGGCAAATTACATAATT 239
                                            *************************************

consensus_461#0      GTGTGTTTATCTATTTTGACTTTAGTGGTCTTAACAGATGAATGTTGGTCATTTGAATAA 300
consensus_461#1      GTGTGTTTATCTATTTTGACTTTAGTGGTCTTAACAGATGAATGTTGGTCATTTGAATAA 299
                     ************************************************************

consensus_461#0      TTGATGCATAGATCGTTGTGCGTTGACCTTCATTCATCTGTTCCATCTCACTTTCATTGC 360
consensus_461#1      TTGATGCATAGATCGTTGTGCGTTGACCTTC--------------------------TGC 333
                     *******************************                          ***

consensus_461#0      TTTCAACAGTATGTTGCCTCCGTAATTCTGATGATTTC-- 398
consensus_461#1      TTTCAACAGTATGTTGCCTCCGTAATTCTGATGATTTCAC 373
                     **************************************