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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4610#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 723 fasta sequence
[GCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACAGTTTACTCAGAGGGTTTATTCAATAGTAGATTATGTATGACAGAATGAAAACCATAATCAACATACAAAGATATATCTTAAAGGAGAAGTGTCAAACACATACGTTTTACAAACAAACTAGTTTTGTTAGCTGTTATATCATGCATCATCGATGTGTCTGGTTAATCATTTGTTCTATCCAAACAGCTACTTTGACGACTAATAAACAACAGTTGTTTCTTCTGACTTCAAAAGATTTGTGAATGCATTATCTTGTTTACCGAAGTACTTCTGTTTGACATCATCTGACAAATATGTTCCATACAATGCTTCATATATATCACATACTAATTGTAAATCAACTTCTGAACGGAAAATAAGTAAACGTTGAGCAGTTAACACACTGACGAGTTCTTTGGGAAGTACATCATGAAATAATGTAGCGAAATACATTGGTTTGTTTACAGAATAAGTATAAAGTGATAATAATAAATCATGCATTTGACCAGATGATCTACGTTTAAATAACTTCAAAGAATGTTCTTTTTAAATCTTGTTGATACATCATATCTAATGCTTCTAATTGAAATGGATTAAGTTCACAAAGAAGATTACTCAATTGTTGTTCAGTAATATTCGTTGAATTCTTCTGTTTCAATAAATAATGAAAAGTTTTATCCACT]
[+] EMBL AI977188 [GCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACAGTTTACTCAGAGGGTTTATTCAATAGTAGATTATGTATGACAGAATGAAAACCATAATCAACATACAAAGATATATCTTAAAGGAGAAGTGTCAAACACATACGTTTTACAAACAAACTAGTTTTGTTAGCTGTTATATCATGCATCATCGATGTGTCTGGTTAATCATTTGTTCTATCCAAACAGCTACTTTGACGACTAATAAACAACAGTTGTTTCTTCTGACTTCAAAAGATTTGTGAATGCATTATCTTGTTTACCGAAGTACTTCTGTTTGACATCATCTGACAAATATGTTCCATACAATGCTTCATATATATCACATACTAATTGTAAATCAACTTCTGAACGGAAAATAAGTAAACGTTGAGCAGTTAACACACTGACGAGTTCTTTGGGAAGTACATCATGAAATAATGTAGCGAAATACATTGGTTTGTTTACAGAATAAGTATAAAGTGATAATAATAAATCATGCATTTGACCAGATGATCTACGTTTAAATAACTTCA ]
[-] EMBL CD192711 [ GTAGCGAAATACATTGGTTTGTTTACAGAATAAGTATAAAGTGATAATAATAAATCATGCATTTGACCAGATGATCTACGTTT AATAACTTCAAAGAATGTTCTTTTTAAATCTTGTTGATACATCATATCTAATGCTTCTAATTGAAATGGATTAAGTTCACAAAGAAGATTACTCAATTGTTGTTCAGTAATATTCGTTGAATTCTTCTGTTTCAATAAATAATGAAAAGTTTTATCCACT]
consensusID : consensus_4610#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 403 fasta sequence
[TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTAACATACAAAGATATATCTTAAAGGAGAAGTGTCAAACACATACGTTTTACAAACAAACTAGTTTTGTTAGCTGTTATATCATGCATCATCGATGTGTCTGGTTAATCATTTGTTCTATCCAAACAGCTACTTTGACGACTAATAAACAACAGTTGTTTCTTCTGACTTCAAAAGATTTGTCAATGCATTATCTTGTTTACCGAAGTACTTCTGTTTGACATCATCTGACAAATATGTTCCATATAATGCTTCATATATATCACATACTAATTGTAAATCAACTTCTGAAAAGGAAAATAAGTAAACGTTGGGCAGTTAACACACTGATGAGTTCTTTATGAAG]
[+] EMBL AI977016 [TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTAACATACAAAGATATATCTTAAAGGAGAAGTGTCAAACACATACGTTTTACAAACAAACTAGTTTTGTTAGCTGTTATATCATGCATCATCGATGTGTCTGGTTAATCATTTGTTCTATCCAAACAGCTACTTTGACGACTAATAAACAACAGTTGTTTCTTCTGACTTCAAAAGATTTGTCAATGCATTATCTTGTTTACCGAAGTACTTCTGTTTGACATCATCTGACAAATATGTTCCATATAATGCTTCATATATATCACATACTAATTGTAAATCAACTTCTGAAAAGGAAAATAAGTAAACGTTGGGCAGTTAACACACTGATGAGTTCTTTATGAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4610#0 ---GCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTT 57
consensus_4610#1 TACGCAGTACGGTAATGCAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTT- 59
********************************************************
consensus_4610#0 TACAGTTTACTCAGAGGGTTTATTCAATAGTAGATTATGTATGACAGAATGAAAACCATA 117
consensus_4610#1 ------------------------------------------------------------
consensus_4610#0 ATCAACATACAAAGATATATCTTAAAGGAGAAGTGTCAAACACATACGTTTTACAAACAA 177
consensus_4610#1 ---AACATACAAAGATATATCTTAAAGGAGAAGTGTCAAACACATACGTTTTACAAACAA 116
*********************************************************
consensus_4610#0 ACTAGTTTTGTTAGCTGTTATATCATGCATCATCGATGTGTCTGGTTAATCATTTGTTCT 237
consensus_4610#1 ACTAGTTTTGTTAGCTGTTATATCATGCATCATCGATGTGTCTGGTTAATCATTTGTTCT 176
************************************************************
consensus_4610#0 ATCCAAACAGCTACTTTGACGACTAATAAACAACAGTTGTTTCTTCTGACTTCAAAAGAT 297
consensus_4610#1 ATCCAAACAGCTACTTTGACGACTAATAAACAACAGTTGTTTCTTCTGACTTCAAAAGAT 236
************************************************************
consensus_4610#0 TTGTGAATGCATTATCTTGTTTACCGAAGTACTTCTGTTTGACATCATCTGACAAATATG 357
consensus_4610#1 TTGTCAATGCATTATCTTGTTTACCGAAGTACTTCTGTTTGACATCATCTGACAAATATG 296
**** *******************************************************
consensus_4610#0 TTCCATACAATGCTTCATATATATCACATACTAATTGTAAATCAACTTCTGAAC-GGAAA 416
consensus_4610#1 TTCCATATAATGCTTCATATATATCACATACTAATTGTAAATCAACTTCTGAAAAGGAAA 356
******* ********************************************* *****
consensus_4610#0 ATAAGTAAACGTTGAGCAGTTAACACACTGACGAGTTCTTTGGGAAGTACATCATGAAAT 476
consensus_4610#1 ATAAGTAAACGTTGGGCAGTTAACACACTGATGAGTTCTTTATGAAG------------- 403
************** **************** ********* ****
consensus_4610#0 AATGTAGCGAAATACATTGGTTTGTTTACAGAATAAGTATAAAGTGATAATAATAAATCA 536
consensus_4610#1 ------------------------------------------------------------
consensus_4610#0 TGCATTTGACCAGATGATCTACGTTTAAATAACTTCAAAGAATGTTCTTTTTAAATCTTG 596
consensus_4610#1 ------------------------------------------------------------
consensus_4610#0 TTGATACATCATATCTAATGCTTCTAATTGAAATGGATTAAGTTCACAAAGAAGATTACT 656
consensus_4610#1 ------------------------------------------------------------
consensus_4610#0 CAATTGTTGTTCAGTAATATTCGTTGAATTCTTCTGTTTCAATAAATAATGAAAAGTTTT 716
consensus_4610#1 ------------------------------------------------------------
consensus_4610#0 ATCCACT 723
consensus_4610#1 -------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||