These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4614#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 648 fasta sequence [GGTGACAGAACAACGACAAATCTTTTTCTTGGGAATCTAAACCCTAAAGTATTTCGGTTTTACTCAGTACATCACATCTTCAGATGACGGAGCAGCAACTATGTGAGGCTTTTGGTCGTTACGGTCCTCTTGCAAGTGTCAAAATAATGTGGCCTAGAACAGAAGAAGAACGTTCGAGAGGAAGGAACTGTGGATTTGTTGCTTTCATGAATAGAAAAGATGGCGAACGAGCCCTCGATAATATTAGAGGGAAGGAACTTATGGGATTTGAAATGAAATTAGGTTGGGGTAAAAGCGTCCCGATCCCTTTATACCCAGTTTACATTCCTCCGGCATTGCTTGAGTTGGTTAAACCACCTCCCCCAAGTGGACTACCATTCAATGCCCAACCTAGAGAGTGGTTAAAGTCATTCCGCTTGGCGATCAAGGAGCGAGCCAAACTTGTAACTGATGGTGCAGACGGTGAGAGCGCGCCACCACCTCCGGCCCCAGACCGAAAGCCTTACGATATAAACAAGATGTCGAGTGAAGAACTTACTGAAGTTAGTATTTAGAGTCTTTCCATTCTTGNCAAACTAAGTTNTAAATAGTTNTTTTAGGAGTCAATATTATTCGCTGGGCAATATCATACTTTGTACGATGTATACT] [+] EMBL CD082649 [GGTGACAGAACAACGACAAATCTTTTTCTTGGGAATCTAAACCCTAAAGTATTTCGGTTTTACTCAGTACATCACATCTTCAGATGACGGAGCAGCAACTATGTGAGGCTTTTGGTCGTTACGGTCCTCTTGCAAGTGTCAAAATAATGTGGCCTAGAACAGAAGAAGAACGTTCGAGAGGAAGGAACTGTGGATTTGTTGCTTTCATGAATAGAAAAGATGGCGAACGAGCCCTCGATAATATTAGAGGGAAGGAACTTATGGGATTTGAAATGAAATTAGGTTGGGGTAAAAGCGTCCCGATCCCTTTATACCCAGTTTACATTCCTCCGGCATTGCTTGAGTTGGTTAAACCACCTCCCCCAAGTGGACTACCATTCAATGCCCAACCTAGAGAGTGGTTAAAGTCATTCCGCTTGGCGATCAAGGAGCGAGCCAAACTTGTAACTGATGGTGCAGACGGTGAGAGCGCGCCACCACCTCCGGCCCCAGACCGAAAGCCTTACGATATAAACAAGATGTCGAGTGAAGAACTTACTGAAGTTAGTATTTAGAGTCTTTCCATTCTTGNCAAACTAAGTTNTAAATAGTTNTTTTAGGAGTCAATATTATTCGCTGGGCAATATCATACTTTGTACGATGTATACT] consensusID : consensus_4614#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 417 fasta sequence [ACACCTCTTCACAGACCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGTCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGACCACTCTCTCCATCGCCAAACCAACACCACCGTCTGCGCTCCCGAAACTCATCAACCAACCACTCTNGTCGCCGCCACCGCTATCACAATCGCTACCATAGCAACCGCCACCGTACCCACCCAAATAGTCATGTGATCTGGTCAAGGCAGTGGCGTAACCAATGGCTACTAATAAGACGACCGTGAGTGACTTGTCCCATTTTTAAAATTGTCGGTGTTGT] [+] EMBL CD129693 [ACACCTCTTCACAGACCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACCGCCGTCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGACCACTCTCTCCATCGCCAAACCAACACCACCGTCTGCGCTCCCGAAACTCATCAACCAACCACTCTNGTCGCCGCCACCGCTATCACAATCGCTACCATAGCAACCGCCACCGTACCCACCCAAATAGTCATGTGATCTGGTCAAGGCAGTGGCGTAACCAATGGCTACTAATAAGACGACCGTGAGTGACTTGTCCCATTTTTAAAATTGTCGGTGTTGT] consensusID : consensus_4614#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 405 fasta sequence [TCAACCAACCACTCGTGTCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGCACATCTCCAATTCAAAAATACATCTCTCTCGCTCACATCTCTGGATACAACTACACCTTTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACACCACCGTCTTCGCTCCTGAA] [+] EMBL CD145711 [TCAACCAACCACTCGTGTCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGCACATCTCCAATTCAAAAATACATCTCTCTCGCTCACATCTCTGGATACAACTACACCTTTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACCACTCTTGTCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTACACTCCAATTCAAAAATACACTCGCTCGCTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCATCAACCAACACCACCGTCTTCGCTCCTGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4614#1 ------------------------------------------------------------ consensus_4614#2 ------------------------------------TCAACCAACCACTCGTGTCGCCGC 24 consensus_4614#0 GGTGACAGAACAACGACAAATCTTTTTCTTGGGAATCTAAACCCTAAAGTATTTCGGTTT 60 consensus_4614#1 ------------------------------------------------------------ consensus_4614#2 CACAAAAACTATACTCCCGTCTAGT--CAGCACATCTCCAATTCAAAAATACATCTCTCT 82 consensus_4614#0 TACTCAGTACATCACATCTTCAGATGACGGAGCAGCAACTATGTGAGGCTTTTGGTCGTT 120 consensus_4614#1 -----------------------ACACCTCTTCACAGACCACTCTCTCCATCGCCAAACC 37 consensus_4614#2 CGCTCACATCTCTGGATACAACTACACCTTTTCACAGTCCACTCTCTCCATCGCCAAACC 142 consensus_4614#0 ACGGTCCTCTTGCAAGTGTCAAAATAATGTGGCCTAGAACAGAAGAAGAACGTTCGAGAG 180 * * * ** ** * * * consensus_4614#1 AACACCACCGTC--TTCGCTCCTGAAACTCATCAACCAA--CCACTCTTGTCGC------ 87 consensus_4614#2 AACACCACCGTC--TTCGCTCCTGAAACTCATCAACCAACACCACCGTCTTCGCTCCTGA 200 consensus_4614#0 GAAGGAACTGTGGATTTGTTGCTTTCATGAATAGAAAAGATGGCGAACGAGCCCTCGATA 240 * ** ** ** * * ** * ** * * * * consensus_4614#1 ---------------CGCCACCGCCGTCGCCACAAAAACTATACTCCCGTCTAGTCAGTA 132 consensus_4614#2 AACTCATCAACCAACCACTCTTGTCGCCGCCACAAAAACTATACTCCCGTCTAGTCAGTA 260 consensus_4614#0 ATATTAGAGGGAAGGAACTTATGGGATTTGAAATGAAATTAGGTTGGGGTAAAAGCGTCC 300 * * * *** ** * ** * * consensus_4614#1 CACTCCAATTCAAAAATACACTCGCTCGCTCA-CATCTCTCGATACAACTA---CACCTC 188 consensus_4614#2 CACTCCAATTCAAAAATACACTCGCTCGCTCA-CATCTCTCGATACAACTA---CACCTC 316 consensus_4614#0 CGATCCCTTTATACCCAGTTTACATTCCTCCGGCATTGCTTGAGTTGGTTAAACCACCTC 360 * *** ** * * ** * *** ** ** ** ****** consensus_4614#1 TTCACAGACCACTCTC-TCCATCGCCAAACCAACACCACCGTCTGCGCTCCCGAAACTCA 247 consensus_4614#2 TTCACAGTCCACTCTC-TCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAACTCA 375 consensus_4614#0 CCCCAAGTGGACTACCATTCAATGCCCAACCTAGAGAGTGGT-TAAAGTCATTCCGCTTG 419 * ** *** * * ** *** **** * * ** * ** ** consensus_4614#1 TCAACCAACCACTC--TNGTCGCCGCCACCGCTATCACAATCGCTACCATAGCA--ACCG 303 consensus_4614#2 TCAACCAAC-ACCA--CCGTCTTCGCTCCTGAA--------------------------- 405 consensus_4614#0 GCGATCAAGGAGCGAGCCAAACTTGTAACTGATGGTGCAGACGGTGAGAGCGCGCCACCA 479 * * *** * * * * consensus_4614#1 CCACCGTACCCACCCAAATAGTCATGTGATCTGGTCAAGGCAGTGGCGTAACCAATGGCT 363 consensus_4614#2 ------------------------------------------------------------ consensus_4614#0 CCTCCGGCCCCAGACCGAAAGCCTTACGATATAAACAAGATGTCGAGTGAAGAACTTACT 539 consensus_4614#1 ACTAATAAGACGACCGTGAGTGACTTGTCCCATTTTTAAAATTGTCGGTGTTGT------ 417 consensus_4614#2 ------------------------------------------------------------ consensus_4614#0 GAAGTTAGTATTTAGAGTCTTTCCATTCTTGNCAAACTAAGTTNTAAATAGTTNTTTTAG 599 consensus_4614#1 ------------------------------------------------- consensus_4614#2 ------------------------------------------------- consensus_4614#0 GAGTCAATATTATTCGCTGGGCAATATCATACTTTGTACGATGTATACT 648 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||