cluster # 4629

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 4629 cluster # 4629 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4629#0 length = 364 sequences # 2

consensus_4629#1 length = 287 sequences # 1

consensusID : consensus_4629#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 364
fasta sequence

                              [TGGTTTACTTCTGTTATTTTCGTCTTCTTGTTCCAACTGAATTTCAAATGCTTTGTCAACAACATCTTTATCAAGTTTAAATGCGGTAACATTTGATAAAGCATTGCTATTATTATTATTATCATTGTTATTATTATTAATATCATCATCATCATCATCATCATCATCAAAGAAGTCTACCCATCCAGGAGGCGTAGTTGGAGAAATATTAGCATTTGTCTCATTAGTAGAATGATTATCCTCTTCCGTTATCATTTTATTTTCTTCATTACTAATCGATTCAATATTGAAATCAAGAATGTTCATGGATTTTGATTGTTGTGGTGGAGGTTGTATGGTGATTGGTAATCACTATCTTTATCTG]

[-] EMBL CD138413             [TGGTTTACTTCTGTTATTTTCGTCTTCTTGTTCCAACTGAATTTCAAATGCTTTGTCAACAACATCTTTATCAAGTTTAAATGCGGTAACATTTGATAAAGCATTGCTATTATTATTATTATCATTGTTATTATTATTAATATCATCATCATCATCATCATCATCATCAAAGA                                                                                                                                                                                               ]
[+] EMBL CD139629             [                                             AAATGCTTTGTCAACAACATCTTTATCAAGTTTAAATGCGGTAACATTTGATAAAGCATTGCTATTATTATTATTATCATTGTTATTATTATTAATATCATCATCATCATCATCATCATCATCAAAGAAGTCTACCCATCCAGGAGGCGTAGTTGGAGAAATATTAGCATTTGTCTCATTAGTAGAATGATTATCCTCTTCCGTTATCATTTTATTTTCTTCATTACTAATCGATTCAATATTGAAATCAAGAATGTTCATGGATTTTGATTGTTGTGGTGGAGGTTGTATGGTGATTGGTAATCACTATCTTTATCTG]




>consensus_4629#0
TGGTTTACTTCTGTTATTTTCGTCTTCTTGTTCCAACTGAATTTCAAATGCTTTGTCAAC
AACATCTTTATCAAGTTTAAATGCGGTAACATTTGATAAAGCATTGCTATTATTATTATT
ATCATTGTTATTATTATTAATATCATCATCATCATCATCATCATCATCAAAGAAGTCTAC
CCATCCAGGAGGCGTAGTTGGAGAAATATTAGCATTTGTCTCATTAGTAGAATGATTATC
CTCTTCCGTTATCATTTTATTTTCTTCATTACTAATCGATTCAATATTGAAATCAAGAAT
GTTCATGGATTTTGATTGTTGTGGTGGAGGTTGTATGGTGATTGGTAATCACTATCTTTA
TCTG

consensusID : consensus_4629#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 287
fasta sequence

                              [CCTATCTCTACAAATGGCATTCTAGCTTTTGAATAATCTTGAGCAAATTCATAATACTATTAGGAGATTCGACCTACGTGAATACTCAATTAACGAGATATTATTTATCATAGTTAGATATAGAATAAATAGCCACTATAAAGTACACTCAATAACTACAAAATAGTCCATTCTGTTTAACATGTTTTTTTCTTTCTATGTGCGGATTGGATAACCATAATGATGATTTCATTTTTACTAAAAACTATAAATACCTGACAGTTTTGTACCATAATTGACACTGTTTG]

[+] EMBL CD160757             [CCTATCTCTACAAATGGCATTCTAGCTTTTGAATAATCTTGAGCAAATTCATAATACTATTAGGAGATTCGACCTACGTGAATACTCAATTAACGAGATATTATTTATCATAGTTAGATATAGAATAAATAGCCACTATAAAGTACACTCAATAACTACAAAATAGTCCATTCTGTTTAACATGTTTTTTTCTTTCTATGTGCGGATTGGATAACCATAATGATGATTTCATTTTTACTAAAAACTATAAATACCTGACAGTTTTGTACCATAATTGACACTGTTTG]




>consensus_4629#1
CCTATCTCTACAAATGGCATTCTAGCTTTTGAATAATCTTGAGCAAATTCATAATACTAT
TAGGAGATTCGACCTACGTGAATACTCAATTAACGAGATATTATTTATCATAGTTAGATA
TAGAATAAATAGCCACTATAAAGTACACTCAATAACTACAAAATAGTCCATTCTGTTTAA
CATGTTTTTTTCTTTCTATGTGCGGATTGGATAACCATAATGATGATTTCATTTTTACTA
AAAACTATAAATACCTGACAGTTTTGTACCATAATTGACACTGTTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4629#0      TGGTTTACTTCTGTTATTTTCGTCTTCTTGTTCCAACTGAATTTCAAATGCTTTGTCAAC 60
consensus_4629#1      ---CCTATCTCTACAAATGGCATTCTAGCTTTTGAAT--AATCTTGAGCA---AATTCAT 52
                           **  ***   * *  * *  *    **  **   *** *  *        *  * 

consensus_4629#0      AACATCTTTATCAAGTTTAAA-TGCGGTAACATTTGATAAAGCATTGCTATTATTATTAT 119
consensus_4629#1      AATACTATTAGGAGATTCGACCTACGTGAATACTCAATTAACGA--GATATTAT--TTAT 108
                      ** *   ***  *  **  *  * **  ** * *  ** **  *  * ******  ****

consensus_4629#0      TATCATTGTTATTATTATTAATA-TCATCATCATCATCA-TCATCATCATCAAAGAAGTC 177
consensus_4629#1      CATAGTTAGATATAGAATAAATAGCCACTATAAAGTACACTCAATAACTACAAAATAGTC 168
                       **  **     **  ** ****  **  ** *    ** ***  * *  ****  ****

consensus_4629#0      TACCC-ATCCAGGAGGCGTAGTTGGAGAAATATTAGCATTTGTCTCATTAGTAGAATGAT 236
consensus_4629#1      CATTCTGTTTAACATGTTTTTTTCTTTCTATGTGCGGATTGG----ATAACCATAATGAT 224
                       *  *  *  *  * *  *  **      ** *  * *** *    ** *  * ******

consensus_4629#0      TATCCTCTTCCGTTATCATTTTATTTTCTTCATTACTAATCGATTCAATATTGAAATCAA 296
consensus_4629#1      GAT-----TTCATTTTTACTAAAAACTATAAATACCTGA-CAGTTTTGTACCATAATTGA 278
                       **     * * ** * * *  *   * *  **  ** * *  **   **    ***  *

consensus_4629#0      GAATGTTCATGGATTTTGATTGTTGTGGTGGAGGTTGTATGGTGATTGGTAATCACTATC 356
consensus_4629#1      CACTGTTTG--------------------------------------------------- 287
                       * ****                                                     

consensus_4629#0      TTTATCTG 364
consensus_4629#1      --------