These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_463#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 396 fasta sequence [CTCGATCAGTGAGCTATTACGCTTTCTTTAAATGATGGCTGCTTCTAAGCCAACATCCTGACTGTTTTAGCCTTCCCACTTCGTTTCCCACTTAGCCAATTTTAGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCTTGAGTCCGGACGTTAGCACCCGGTGCTCTGTCTCCCAAGCTGTACTCTTCGGTATTCGGAGTTTGCATAGGTTTGGTAAGTCGCTCAGGAGCTCGAGCCGGACCTGTGCTCGCGAAATGGCGCGTTGCCCTTGGTAGACACCTTCCATGAGTTCCACGGCAATGCCGATCGTGCCGGTCACGCCGACGGGGTAGACCTTGAGACCGACAAGCGTCTGCTCGAGGATTGGCTGAGCGGGATCACTCGACCAGTAGCCG] [+] EMBL CD124534 [CTCGATCAGTGAGCTATTACGCTTTCTTTAAATGATGGCTGCTTCTAAGCCAACATCCTGACTGTTTTAGCCTTCCCACTTCGTTTCCCACTTAGCCAATTTTAGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCTTGAGTCCGGACGTTAGCACCCGGTGCTCTGTCTCCCAAGCTGTACTCTTCGGTATTCGGAGTTTGCATAGGTTTGGTAAGTCGCTCAGGAGCTCGAGCCGGACCTGTGCTCGCGAAATGGCGCGTTGCCCTTGGTAGACACCTTCCATGAGTTCCACGGCAATGCCGATCGTGCCGGTCACGCCGACGGGGTAGACCTTGAGACCGACAAGCGTCTGCTCGAGGATTGGCTGAGCGGGATCACTCGACCAGTAGCCG] consensusID : consensus_463#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 212 fasta sequence [GCTCAGACAGCAGGATGTGGCTTAGAAGCGGCCATCATTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCTCAAATCAGGCACCGAAGCCGCGGATTCATACTTTGTATGAGTGGTAGGGGAGCGTTCTGTAAGTCTGTGAAGGTGTGTCGTGAGGCATGCTGGAGATATCAGAAGTGCGAATGC] [+] EMBL CD086990 [GCTCAGACAGCAGGATGTGGCTTAGAAGCGGCCATCATTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGCGCGGAAGATGTAACGGGGCTCAAATCAGGCACCGAAGCCGCGGATTCATACTTTGTATGAGTGGTAGGGGAGCGTTCTGTAAGTCTGTGAAGGTGTGTCGTGAGGCATGCTGGAGATATCAGAAGTGCGAATGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_463#0 CTCGATCAGTGAGCTATTACGCTTTCTTTAAATGATGGCTGCTTCTAAGCCAACATCCTG 60 consensus_463#1 ------------------------------------------------------------ consensus_463#0 ACTGTTTTAGCCTTCCCACTTCGTTTCCCACTTAGCCAATTTTAGGGACCTTAGCTGGCG 120 consensus_463#1 ------------------------------------------------------------ consensus_463#0 GTCTGGGTTGTTTCCCTCTTGAGTCCGGACGTTAGCACCCGGTGCTCTGTCTCCCAAGCT 180 consensus_463#1 ------------------------------GCTCAGACAGCAGGATGTGGCTTAGAAGCG 30 * * ** * * ** ** **** consensus_463#0 GTACTCTTCGGTATTCGGAGTTTGCATAGGTTTGGTAAGTCGCTCAGGAGCTCGAGCCGG 240 consensus_463#1 GCCATCATTTAAAGAAAGCGTAATAGCTCACTGGTCGAGTCGGCCTGC-GCGGAAGATGT 89 * ** * * * ** * * ***** * * ** ** * consensus_463#0 ACCTGTGCTCGCGAAATGGCGCGTTGCCCTTGGTAGACACCTTCCATGAGTTCCACGGCA 300 consensus_463#1 AACGGGGCTCAAATCAGGCACCGAAGCCGCGGATTCATACTTTGTATGAGTGGTAGGGGA 149 * * * **** * * ** *** * * * ** ** ****** * ** * consensus_463#0 ATGCCGATCGTGCCGGTCACGCCGACGGGGTAGACCTTGAGACCGACAAGCGTCTGCTCG 360 consensus_463#1 GCGTT--------CTGTAAGTCTGTGAAGGTGTGTCGTGAGGCATGCTGGAGA-TATCAG 200 * * ** * * * *** * **** * * * * * * consensus_463#0 AGGATTGGCTGAGCGGGATCACTCGACCAGTAGCCG 396 consensus_463#1 AAGTGCGAATGC------------------------ 212 * * * ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||