These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4631#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 426 fasta sequence [GGAGTATGGGCAAAGACAAGCGTGTTGTATATTTTTACGATCCAGATTGTGGGAATTTTCATTATGGACCGAATCATCCCATGAAACCACATAGACTTACACTAACTCATACCCTTGTGGTAAATTATAATCTGACAGATCGTATGAAGGTCTACAAACCATATCATGCTAGTATGAAGGATATGATATCATTTCATTCACAAGAATATATCGAATTCTTGCGTGATGTTACACCAACTAATGTGCATACATTTCCTAAAGAAAAATTATTAACCTATAATATTGGTGAAGATTGTCCAATTTTCGATGGTATATATCGCTTTTCTTCTATTCACACTGGTGCATCACTTCAAGCTGCTAAATATTTAAATAATGGAGTAACAGATATTGCAATCAATTGGTCAGGCGGACTTCATCATGCTAAGA] [+] EMBL AI977521 [GGAGTATGGGCAAAGACAAGCGTGTTGTATATTTTTACGATCCAGATTGTGGGAATTTTCATTATGGACCGAATCATCCCATGAAACCACATAGACTTACACTAACTCATACCCTTGTGGTAAATTATAATCTGACAGATCGTATGAAGGTCTACAAACCATATCATGCTAGTATGAAGGATATGATATCATTTCATTCACAAGAATATATCGAATTCTTGCGTGATGTTACACCAACTAATGTGCATACATTTCCTAAAGAAAAATTATTAACCTATAATATTGGTGAAGATTGTCCAATTTTCGATGGTATATATCGCTTTTCTTCTATTCACACTGGTGCATCACTTCAAGCTGCTAAATATTTAAATAATGGAGTAACAGATATTGCAATCAATTGGTCAGGCGGACTTCATCATGCTAAGA] consensusID : consensus_4631#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 269 fasta sequence [ATTCTTGCGTGATGTTACACCAACTAATGTGCATACATTTCCTAAAGAAAAATTATTAACCTATAATATTGGTGAAGATTGTCCAATTTTCGATGGTATATATCGCTTTTCCTCTATTCACACTGGTGCATCACTTCAAGCTGCTAAATATTTAAATAATGGAGTATGCATAAAAAATTTATCAAAAAAGTCATCTATTATAATTTATTCAATTTAGGTAACAGATATTGCAATCAATTGGTCAGGCGGACTTCATCATGCTAAGGAAT] [-] EMBL CD199575 [ATTCTTGCGTGATGTTACACCAACTAATGTGCATACATTTCCTAAAGAAAAATTATTAACCTATAATATTGGTGAAGATTGTCCAATTTTCGATGGTATATATCGCTTTTCCTCTATTCACACTGGTGCATCACTTCAAGCTGCTAAATATTTAAATAATGGAGTATGCATAAAAAATTTATCAAAAAAGTCATCTATTATAATTTATTCAATTTAGGTAACAGATATTGCAATCAATTGGTCAGGCGGACTTCATCATGCTAAGGAAT] [-] EMBL CD199474 [ATTCTTGCGTGATGTTACACCAACTAATGTGCATACATTTCCTAAAGAAAAATTATTAACCTATAATATTGGTGAAGATTGTCCAATTTTCGATGGTATATATCGCTTTTCCTCTATTCACACTGGTGCATCACTTCAAGCTGCTAAATATTTAAATAATGGAGTATGCATAAAAAATTTATCAAAAAAGTCATCTATTATAATTTATTCAATTTAGGTAACAGATATTGCGATCAATTGGTCAGGCGGACTTCATCATGCTAAGAAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4631#0 GGAGTATGGGCAAAGACAAGCGTGTTGTATATTTTTACGATCCAGATTGTGGGAATTTTC 60 consensus_4631#1 ------------------------------------------------------------ consensus_4631#0 ATTATGGACCGAATCATCCCATGAAACCACATAGACTTACACTAACTCATACCCTTGTGG 120 consensus_4631#1 ------------------------------------------------------------ consensus_4631#0 TAAATTATAATCTGACAGATCGTATGAAGGTCTACAAACCATATCATGCTAGTATGAAGG 180 consensus_4631#1 ------------------------------------------------------------ consensus_4631#0 ATATGATATCATTTCATTCACAAGAATATATCGAATTCTTGCGTGATGTTACACCAACTA 240 consensus_4631#1 ----------------------------------ATTCTTGCGTGATGTTACACCAACTA 26 ************************** consensus_4631#0 ATGTGCATACATTTCCTAAAGAAAAATTATTAACCTATAATATTGGTGAAGATTGTCCAA 300 consensus_4631#1 ATGTGCATACATTTCCTAAAGAAAAATTATTAACCTATAATATTGGTGAAGATTGTCCAA 86 ************************************************************ consensus_4631#0 TTTTCGATGGTATATATCGCTTTTCTTCTATTCACACTGGTGCATCACTTCAAGCTGCTA 360 consensus_4631#1 TTTTCGATGGTATATATCGCTTTTCCTCTATTCACACTGGTGCATCACTTCAAGCTGCTA 146 ************************* ********************************** consensus_4631#0 AATATTTAAATAATGGAGTA---------------------------------------- 380 consensus_4631#1 AATATTTAAATAATGGAGTATGCATAAAAAATTTATCAAAAAAGTCATCTATTATAATTT 206 ******************** consensus_4631#0 --------------ACAGATATTGCAATCAATTGGTCAGGCGGACTTCATCATGCTAAGA 426 consensus_4631#1 ATTCAATTTAGGTAACAGATATTGCAATCAATTGGTCAGGCGGACTTCATCATGCTAAGG 266 ********************************************* consensus_4631#0 --- consensus_4631#1 AAT 269 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||