These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4633#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 540 fasta sequence [TGTTGCCATCAGTCCCCATCCTTTGTCTTTACCCGCATAAAAGGGTCTCGTCGGAGCGTAAAGCCTCATCTGGAACTGACGATTACTGCAAAAATCACCAGCAGCACAATGCAGTCCGCACTCAATATTTAGGGCACGGTTAATGCAACCAGGACCACAGGAAAGTATGCCTAGGTTAAGTTCCACTGGAGTAGGAGCGACACAATCGCAAATCCACTGTCGCATTTCATAGTGTAATGAACTAGCACGCAATCCAGTTGCCCCAAGAAGCTTGCCACTCCCCGAGTATGTTGTCTTACTGGGAATCGATGAACGGGTTGAACTCAAAAGACTGTAATCATTGTTCAACAGGTGAGCGTATTGTGGAGTAGGTGCTCCAGGATACGAAGAAAAAATGCTGCTTAGATCAACATCATAACTGTGGGACAGAAACAAGAGGATATTTGTGGAAGTCCGTTTTGAATCAACAAAAAAGTCAATTAAGTAATTCTAGCAATTGTCATTTAGTTATCAACTAATCTTATCAGNCATTCGAATGGT] [+] EMBL CD131689 [TGTTGCCATCAGTCCCCATCCTTTGTCTTTACCCGCATAAAAGGGTCTCGTCGGAGCGTAAAGCCTCATCTGGAACTGACGATTACTGCAAAAATCACCAGCAGCACAATGCAGTCCGCACTCAATATTTAGGGCACGGTTAATGCAACCAGGACCACAGGAAAGTATGCCTAGGTTAAGTTCCACTGGAGTAGGAGCGACACAATCGCAAATCCACTGTCGCATTTCATAGTGTAATGAACTAGCACGCAATCCAGTTGCCCCAAGAAGCTTGCCACTCCCCGAGTATGTTGTCTTACTGGGAATCGATGAACGGGTTGAACTCAAAAGACTGTAATCATTGTTCAACAGGTGAGCGTATTGTGGAGTAGGTGCTCCAGGATACGAAGAAAAAATGCTGCTTAGATCAACATCATAACTGTGGGACAGAAACAAGAGGATATTTGTGGAAGTCCGTTTTGAATCAACAAAAAAGTCAATTAAGTAATTCTAGCAATTGTCATTTAGTTATCAACTAATCTTATCAGNCATTCGAATGGT] consensusID : consensus_4633#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 522 fasta sequence [TCTTTACCCGCATAAAAGGGTCTCGTCGGAGCGTAAAGCCTCATCTGGAACTGACGATTACTGCAAAAATCACCAGCAGCACAATGCAGTCCGCACTCAATATTTAGGGCACGGTTAATGCAACCAGGACCACAGGAAAGTATGCCTAGGTTAAGTTCCACTGGAGTAGGAGCGACACAATCGCAAATCCACTGTCGCATTTCATAGTGTAATGAACTAGCACGCAATCCAGTTGCCCCAAGAAGCTTGCCACTCCCCGAGTATGTTGTCTTACTGGGAATCGATGAACGGGTTGAACTCAAAAGACTGTAATCATTGTTCAACAGGTGAGTGTATTGTGGAGTAGGTGCTCCAGGATACGAAG-AAAAAATGCTGCTTAGATCAACATCATAATCGGATAACCTTTCATGCGGATTGAGAGTGTTGGACAGAAAACACATCGGGATATGAGGCTTAATCTTCCGTTTCCGCAGGTCGTATTTCAATTCGCATGGCCTAATGTCCTGCGTACTGACAACTGTT] [-] EMBL CD146091 [TCTTTACCCGCATAAAAGGGTCTCGTCGGAGCGTAAAGCCTCATCTGGAACTGACGATTACTGCAAAAATCACCAGCAGCACAATGCAGTCCGCACTCAATATTTAGGGCACGGTTAATGCAACCAGGACCACAGGAAAGTATGCCTAGGTTAAGTTCCACTGGAGTAGGAGCGACACAATCGCAAATCCACTGTCGCATTTCATAGTGTAATGAACTAGCACGCAATCCAGTTGCCCCAAGAAGCTTGCCACTCCCCGAGTATGTTGTCTTACTGGGAATCGATGAACGGGTTGAACTCAAAAGACTGTAATCATTGTTCAACAGGTGAGTGTATTGTGGAGTAGGTGCTCCAGGATACGAAG AAAAAATGCTGCTTAGATCAACATCATAATCGGATAACCTTTCATGCGGATTGAG ] [+] EMBL CD185790 [ ACGGGTTGAACTCAAAAGACTGTAATCATTGTTCAACAGGTGAGTGTATTGTGGAGTAGGTGCTCCAGGATACGAAGAAAAAAATGCTGCTTAGATCAACATCATAATCGGATAACCTTTCATACGGATTGAGAGTGTTGGACAGAAAACACATCGGGATATGAGGCTTAATCTTCCGTTTCCGCAGGTCGTATTTCAATTCGCATGGCCTAATGTCCTGCGTACTGACAACTGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4633#0 TGTTGCCATCAGTCCCCATCCTTTGTCTTTACCCGCATAAAAGGGTCTCGTCGGAGCGTA 60 consensus_4633#1 -------------------------TCTTTACCCGCATAAAAGGGTCTCGTCGGAGCGTA 35 *********************************** consensus_4633#0 AAGCCTCATCTGGAACTGACGATTACTGCAAAAATCACCAGCAGCACAATGCAGTCCGCA 120 consensus_4633#1 AAGCCTCATCTGGAACTGACGATTACTGCAAAAATCACCAGCAGCACAATGCAGTCCGCA 95 ************************************************************ consensus_4633#0 CTCAATATTTAGGGCACGGTTAATGCAACCAGGACCACAGGAAAGTATGCCTAGGTTAAG 180 consensus_4633#1 CTCAATATTTAGGGCACGGTTAATGCAACCAGGACCACAGGAAAGTATGCCTAGGTTAAG 155 ************************************************************ consensus_4633#0 TTCCACTGGAGTAGGAGCGACACAATCGCAAATCCACTGTCGCATTTCATAGTGTAATGA 240 consensus_4633#1 TTCCACTGGAGTAGGAGCGACACAATCGCAAATCCACTGTCGCATTTCATAGTGTAATGA 215 ************************************************************ consensus_4633#0 ACTAGCACGCAATCCAGTTGCCCCAAGAAGCTTGCCACTCCCCGAGTATGTTGTCTTACT 300 consensus_4633#1 ACTAGCACGCAATCCAGTTGCCCCAAGAAGCTTGCCACTCCCCGAGTATGTTGTCTTACT 275 ************************************************************ consensus_4633#0 GGGAATCGATGAACGGGTTGAACTCAAAAGACTGTAATCATTGTTCAACAGGTGAGCGTA 360 consensus_4633#1 GGGAATCGATGAACGGGTTGAACTCAAAAGACTGTAATCATTGTTCAACAGGTGAGTGTA 335 ******************************************************** *** consensus_4633#0 TTGTGGAGTAGGTGCTCCAGGATACGAAGAAAAAATGCTGCTTAGATCAACATCATAACT 420 consensus_4633#1 TTGTGGAGTAGGTGCTCCAGGATACGAAGAAAAAATGCTGCTTAGATCAACATCATAATC 395 ********************************************************** consensus_4633#0 GTGGGACAG---AAACAAGAGGATATTTGTGGAAGTCCGTTTTGAATCAACAAAAAAGTC 477 consensus_4633#1 GGATAACCTTTCATGCGGATTGAGAGTGTTGGACAGAAAACACATCGGGATATGAGGCTT 455 * ** * * ** * * **** * * * * consensus_4633#0 AATTAAGTAATTCTAGCAATTGTCATTTAGTT---ATCAACTAATCTTATCAGNCATTCG 534 consensus_4633#1 AATCTTCCGTTTCCGCAGGTCGTATTTCAATTCGCATGGCCTAATGTCCTGCGTACTGAC 515 *** *** * ** ** * ** ** ***** * * * * consensus_4633#0 AATGGT- 540 consensus_4633#1 AACTGTT 522 ** ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||