cluster # 464

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Schistosoma mansoni
cluster # 464 cluster # 464 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_464#0 length = 489 sequences # 1

consensus_464#1 length = 84 sequences # 1

consensusID : consensus_464#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 489
fasta sequence

                              [AAGTGATAGGCTGTTGAAGTCGGTATTCTGATTAGAGGATTCATCACGTGATAATTGACAGGAACATAAGTCCTAACAATATTCACTCCAGGACTCAAACTACGTAGGCAAACGATGTTTTCAATAACTTCAGAATCATCATCGTCTCCACAGTTATAAATTGACATGTGGTAGTGAAAGTAAAAGATGATCTGTCACTGAGCGTGAGAAAACAGGCACTTATCCTACTGACTAAAGGATATGTGATTTTTTTCCTCCCATTACTTTCTATCACGGACTCACCGAAACTGATTACTCGTTATAAGCAAAGATGGATAGTGGCTAGCAGTGGAATCCAGTTTGACGCGCGTTTCATCCTATCTGGGGCTCGTCAGCTGGGTGTACCTGCATCTCAGAGTTGATGTTCACTCTGGGACTCGAACCCAGTACTTTTCGCTTCAAATGTCATCGCGTTATCCACTCAGCTACTGATTACTTGTTATTGTGTTG]

[+] EMBL CD069561             [AAGTGATAGGCTGTTGAAGTCGGTATTCTGATTAGAGGATTCATCACGTGATAATTGACAGGAACATAAGTCCTAACAATATTCACTCCAGGACTCAAACTACGTAGGCAAACGATGTTTTCAATAACTTCAGAATCATCATCGTCTCCACAGTTATAAATTGACATGTGGTAGTGAAAGTAAAAGATGATCTGTCACTGAGCGTGAGAAAACAGGCACTTATCCTACTGACTAAAGGATATGTGATTTTTTTCCTCCCATTACTTTCTATCACGGACTCACCGAAACTGATTACTCGTTATAAGCAAAGATGGATAGTGGCTAGCAGTGGAATCCAGTTTGACGCGCGTTTCATCCTATCTGGGGCTCGTCAGCTGGGTGTACCTGCATCTCAGAGTTGATGTTCACTCTGGGACTCGAACCCAGTACTTTTCGCTTCAAATGTCATCGCGTTATCCACTCAGCTACTGATTACTTGTTATTGTGTTG]




>consensus_464#0
AAGTGATAGGCTGTTGAAGTCGGTATTCTGATTAGAGGATTCATCACGTGATAATTGACA
GGAACATAAGTCCTAACAATATTCACTCCAGGACTCAAACTACGTAGGCAAACGATGTTT
TCAATAACTTCAGAATCATCATCGTCTCCACAGTTATAAATTGACATGTGGTAGTGAAAG
TAAAAGATGATCTGTCACTGAGCGTGAGAAAACAGGCACTTATCCTACTGACTAAAGGAT
ATGTGATTTTTTTCCTCCCATTACTTTCTATCACGGACTCACCGAAACTGATTACTCGTT
ATAAGCAAAGATGGATAGTGGCTAGCAGTGGAATCCAGTTTGACGCGCGTTTCATCCTAT
CTGGGGCTCGTCAGCTGGGTGTACCTGCATCTCAGAGTTGATGTTCACTCTGGGACTCGA
ACCCAGTACTTTTCGCTTCAAATGTCATCGCGTTATCCACTCAGCTACTGATTACTTGTT
ATTGTGTTG

consensusID : consensus_464#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 84
fasta sequence

                              [GGACCTCCCATATTATAACCCATCGGTGGCATGCACCCAGGCCCAGATCCACCGTATCCAGGGCCACTGAATCCTCCCTGTCCA]

[+] EMBL CD155885             [GGACCTCCCATATTATAACCCATCGGTGGCATGCACCCAGGCCCAGATCCACCGTATCCAGGGCCACTGAATCCTCCCTGTCCA]




>consensus_464#1
GGACCTCCCATATTATAACCCATCGGTGGCATGCACCCAGGCCCAGATCCACCGTATCCA
GGGCCACTGAATCCTCCCTGTCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_464#0      AAGTGATAGGCTGTTGAAGTCGGTATTCTGATTAGAGGATTCATCACGTGATAATTGACA 60
consensus_464#1      ------------------------------------------------------------
                                                                                 

consensus_464#0      GGAACATAAGTCCTAACAATATTCACTCCAGGACTCAAACTACGTAGGCAAACGATGTTT 120
consensus_464#1      ------------------------------------------------------------
                                                                                 

consensus_464#0      TCAATAACTTCAGAATCATCATCGTCTCCACAGTTATAAATTGACATGTGGTAGTGAAAG 180
consensus_464#1      ------------------------------------------------------------
                                                                                 

consensus_464#0      TAAAAGATGATCTGTCACTGAGCGTGAGAAAACAGGCACTTATCCTACTGACTAAAGGAT 240
consensus_464#1      ------------------------------------------------------------
                                                                                 

consensus_464#0      ATGTGATTTTTTTCCTCCCATTACTTTCTATCACGGACTCACCGAAACTGATTACTCGTT 300
consensus_464#1      ------------------------------------------------------------
                                                                                 

consensus_464#0      ATAAGCAAAGATGGATAGTGGCTAGCAGTGGAATCCAGTTTGACGCGCGTTTCATCCTAT 360
consensus_464#1      --------------------------------------------GGACCTCCCATATTAT 16
                                                                 *  * *  ***  ***

consensus_464#0      CTGGGGCTCGTCAGCTGGGTGTACCTGCATCTCAGAGTTGATGTTCACTCTGGGACTCGA 420
consensus_464#1      ----AACCCATCGGTGGCATGCACCCA-GGCCCAGATCCACCGT--ATCCAGGGCCACTG 69
                           * * ** *  *  ** ***     * ****      **  *  * *** * *  

consensus_464#0      ACCCAGTACTTTTCGCTTCAAATGTCATCGCGTTATCCACTCAGCTACTGATTACTTGTT 480
consensus_464#1      AATCCTCCCTGTCCA--------------------------------------------- 84
                     *  *    ** * *                                              

consensus_464#0      ATTGTGTTG 489
consensus_464#1      ---------