These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4643#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 561 fasta sequence [TAGGAATTGGCCTCGAGGCAAGAATCGGCACGAGGTGTGTCCGAACCATTATACCGTGAATACTTGACCGTTCCCAGCCTGGTTTCTGCTGTACTCAGATTGCTTTCAGCGCTTAATGGATTTAACTTGTTCAATCTGCCTTAATGTCTTGTTCAGACCAGTTCATCTCCCTTGCAACCATCAATTCTGCAAGGATTGCATAGTTCAGGCTTTAAACTTCACTGCATATCAATGTCCTATTTGCAGATACAGACTTTCAAACTGGTTACGGAGAGTAAAAGATATGGATTCAGCAGTTTCGGAAAGTAAAGAAAATGAAATTCGAAGTCTTTTTCCAAATTATTATGATGCCAAAGAATCGGGAATGTCTCCTTCCTTATCTGAATCTGAAATCGAAACCCTTGCAGCAAAAAACACAGATCCTATTCCAAACTGTTTTGCCGAACCAGGAGATGTGCATGATTATTATATGAAAGAGATCGAGAAGTACTCACATTTACGCTCTGTAGAAGAGAAAGAAAATGAAGAAGCTTCCTTAGCACTAGCTGCTCAGCTCCTATT] [+] EMBL CD083640 [TAGGAATTGGCCTCGAGGCAAGAATCGGCACGAGGTGTGTCCGAACCATTATACCGTGAATACTTGACCGTTCCCAGCCTGGTTTCTGCTGTACTCAGATTGCTTTCAGCGCTTAATGGATTTAACTTGTTCAATCTGCCTTAATGTCTTGTTCAGACCAGTTCATCTCCCTTGCAACCATCAATTCTGCAAGGATTGCATAGTTCAGGCTTTAAACTTCACTGCATATCAATGTCCTATTTGCAGATACAGACTTTCAAACTGGTTACGGAGAGTAAAAGATATGGATTCAGCAGTTTCGGAAAGTAAAGAAAATGAAATTCGAAGTCTTTTTCCAAATTATTATGATGCCAAAGAATCGGGAATGTCTCCTTCCTTATCTGAATCTGAAATCGAAACCCTTGCAGCAAAAAACACAGATCCTATTCCAAACTGTTTTGCCGAACCAGGAGATGTGCATGATTATTATATGAAAGAGATCGAGAAGTACTCACATTTACGCTCTGTAGAAGAGAAAGAAAATGAAGAAGCTTCCTTAGCACTAGCTGCTCAGCTCCTATT] [+] EMBL AI976179 [ ATACTTGACCGTTCCCAGCCTGGTTTCTGCTGTACTCAGATTGCTTTCAGCGCTTAATGGATTTAACTTGTTCAATCTGCCTTAATGTCTTGTTCAGACCAGTTCATCTCCCTTGCAACCATCAATTCTGCAAGGATTGCATAGTTCAGGCTTTAAACTTCACTGCATATCAATGTCCTATTTGCAGATACAGACTTTCAAACTGGTTACGGAGAGTAAAAGATATGGATTCAGCAGTTTCGGAAAGTAAAGAAAATGAAATTCGAAGTCTTTTTCCAAATTATTATGATGCCAAAGAATCGGGAATGTCTCCTTCCTTATCTGAATCTGAAATCGAAACCCTTGCAGCAAAAAACACAGATCCTATTCCAAACTGTTTTGCCGAACCAGGAGATGTGCATGATTATTATATGAAAGAGATCGAGAAGTACTCACATTTACGCTCTGTAGAAGAGAAAGAAAATGAAGAAGCTTCCTTAGCACTAGCTGCTCAGCTCC ] consensusID : consensus_4643#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 269 fasta sequence [TTGTTACTAGTACATGTATGTACCAGTTATTTTAACGTTGATAAGCACTATGCGTTATACGTCAGCCTTATGCGCTAGTTATAATTAAAATGTGTTCACAAAATATTTCATTGAGTACCAATCTTTTTGAACCTTGCAGGTGTGTTCCGAACCATTATACCGTGAATACTTGACCGTTCCCAGCCTGGTTTCTGCTGTACTCAGATTGCTTTCAGCGCTTAATGGATTTAACTTGTTCAATCTGCCTTAATGTCTTGTTCAGACCAGTT] [-] EMBL CD166387 [TTGTTACTAGTACATGTATGTACCAGTTATTTTAACGTTGATAAGCACTATGCGTTATACGTCAGCCTTATGCGCTAGTTATAATTAAAATGTGTTCACAAAATATTTCATTGAGTACCAATCTTTTTGAACCTTGCAGGTGTGTTCCGAACCATTATACCGTGAATACTTGACCGTTCCCAGCCTGGTTTCTGCTGTACTCAGATTGCTTTCAGCGCTTAATGGATTTAACTTGTTCAATCTGCCTTAATGTCTTGTTCAGACCAGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4643#0 ------------------------------------------------------------ consensus_4643#1 TTGTTACTAGTACATGTATGTACCAGTTATTTTAACGTTGATAAGCACTATGCGTTATAC 60 consensus_4643#0 --------------------------------------TAGGAATTGGCCTCGAGGCAAG 22 consensus_4643#1 GTCAGCCTTATGCGCTAGTTATAATTAAAATGTGTTCACAAAATATTTCATTGAG-TACC 119 * * * * * *** * consensus_4643#0 AATCGGCACGA--------GGTGTGT-CCGAACCATTATACCGTGAATACTTGACCGTTC 73 consensus_4643#1 AATCTTTTTGAACCTTGCAGGTGTGTTCCGAACCATTATACCGTGAATACTTGACCGTTC 179 **** ** ******* ********************************* consensus_4643#0 CCAGCCTGGTTTCTGCTGTACTCAGATTGCTTTCAGCGCTTAATGGATTTAACTTGTTCA 133 consensus_4643#1 CCAGCCTGGTTTCTGCTGTACTCAGATTGCTTTCAGCGCTTAATGGATTTAACTTGTTCA 239 ************************************************************ consensus_4643#0 ATCTGCCTTAATGTCTTGTTCAGACCAGTTCATCTCCCTTGCAACCATCAATTCTGCAAG 193 consensus_4643#1 ATCTGCCTTAATGTCTTGTTCAGACCAGTT------------------------------ 269 ****************************** consensus_4643#0 GATTGCATAGTTCAGGCTTTAAACTTCACTGCATATCAATGTCCTATTTGCAGATACAGA 253 consensus_4643#1 ------------------------------------------------------------ consensus_4643#0 CTTTCAAACTGGTTACGGAGAGTAAAAGATATGGATTCAGCAGTTTCGGAAAGTAAAGAA 313 consensus_4643#1 ------------------------------------------------------------ consensus_4643#0 AATGAAATTCGAAGTCTTTTTCCAAATTATTATGATGCCAAAGAATCGGGAATGTCTCCT 373 consensus_4643#1 ------------------------------------------------------------ consensus_4643#0 TCCTTATCTGAATCTGAAATCGAAACCCTTGCAGCAAAAAACACAGATCCTATTCCAAAC 433 consensus_4643#1 ------------------------------------------------------------ consensus_4643#0 TGTTTTGCCGAACCAGGAGATGTGCATGATTATTATATGAAAGAGATCGAGAAGTACTCA 493 consensus_4643#1 ------------------------------------------------------------ consensus_4643#0 CATTTACGCTCTGTAGAAGAGAAAGAAAATGAAGAAGCTTCCTTAGCACTAGCTGCTCAG 553 consensus_4643#1 ------------------------------------------------------------ consensus_4643#0 CTCCTATT 561 consensus_4643#1 -------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||