These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4648#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 619 fasta sequence [ACCAAAGAGACGAAAAATTTTTGGTGGTGGTTATTTCGACTAGGTTTAATGGTGATATAAAAAACTTTTTTTGTTAAATTTGTAACATTAGACAGCTTAATTTCCAATTCAATGATTGGGGTAGCCTATTTGGAAATCACCAATGTGTATTACAAGGCAAAACCTAACGTGAAATCCTGAAGAGAAACGAAAAAGAGGAAGGCCAAAGAATACACTACGTCGGAATTAAGAAGCACACATGAAAAGGATGAATTGCAACTGGAAAGGACTGTCCACGACGGAGTTATATGGAGCATGTTGATGGGTGGCCTATGCTCCCCTATGAGGGTAAAAGGCGTAAGTGAATTAGCTGGACAACACTTCAATGTTAAGGCATAAATTCTGTGGAACATCCTTTTACATATTTCATAGTGTTCTCCAGATTATAGACTAAAAATATCAAAATATGTGAGAATTATCTTGTATATACTATATCATGATCACAACTATGAATTATGTCCAACCAACATTGAAGCGTATTCTATTCACTGACAGTCAATCAGTTGGTTGCGCAGTTTGATAACGATGATGCTGTTCAGAATCATGTTATCACTTGTTTAGAAGTATATGAAGAATGGGC] [+] EMBL CD131660 [ACCAAAGAGACGAAAAATTTTTGGTGGTGGTTATTTCGACTAGGTTTAATGGTGATATAAAAAACTTTTTTTGTTAAATTTGTAACATTAGACAGCTTAATTTCCAATTCAATGATTGGGGTAGCCTATTTGGAAATCACCAATGTGTATTACAAGGCAAAACCTAACGTGAAATCCTGAAGAGAAACGAAAAAGAGGAAGGCCAAAGAATACACTACGTCGGAATTAAGAAGCACACATGAAAAGGATGAATTGCAACTGGAAAGGACTGTCCACGACGGAGTTATATGGAGCATGTTGATGGGTGGCCTATGCTCCCCTATGAGGGTAAAAGGCGTA ] [+] EMBL CD201385 [ CACGACGGAGTTAGATGGAGCATGTTGATGGGTGGCCTATGCTCCCCTATGAGGGTAAAAGGCGTAAGTGAATTAGCTGGACAACACTTCAATGTTAAGGCATAAATTCTGTGGAACATCCTTTTACATATTTCATAGTGTTCTCCAGATTATAGACTAAAAATATCAAAATATGTGAGAATTATCTTGTATATACTATATCATGATCACAACTATGAATTATGTCCAACCAACATTGAAGCGTATTCTATTCACTGACAGTCAATCAGTTGGTTGCGCAGTTTGATAACGATGATGCTGTTCAGAATCATGTTATCACTTGTTTAGAAGTATATGAAGAATGGGC] consensusID : consensus_4648#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 336 fasta sequence [CTACTTCGACCATCATCAAGAAGGTAAAAGGATTTATAAATAGTTGTCTACTCAAGATACTCAATATCCGTTGGTCGGATATCATCAGCAACAGCCTTCAGTAGGAGAGAAGAAATCAGGTTCCATCTGAAATTAGTAAAAGACGTTGGAGGTGGATAGGACATACATTGAGGAAATTATCAAACTGCACCACAAGGCATGGACTAACGTGAAATCCTGAAGAGAAACGAAAAAGAGGAAGGCCAAAGAATACACTACGTCGGAATTAAGAAGCAGACATGAAAAGGATGAATTGCAACTGGAAAGGACTGTCCACGACGGAGTTAGATGGAGCAT] [-] EMBL CD147809 [CTACTTCGACCATCATCAAGAAGGTAAAAGGATTTATAAATAGTTGTCTACTCAAGATACTCAATATCCGTTGGTCGGATATCATCAGCAACAGCCTTCAGTAGGAGAGAAGAAATCAGGTTCCATCTGAAATTAGTAAAAGACGTTGGAGGTGGATAGGACATACATTGAGGAAATTATCAAACTGCACCACAAGGCATGGACTAACGTGAAATCCTGAAGAGAAACGAAAAAGAGGAAGGCCAAAGAATACACTACGTCGGAATTAAGAAGCAGACATGAAAAGGATGAATTGCAACTGGAAAGGACTGTCCACGACGGAGTTAGATGGAGCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4648#0 --------------ACCAAAGAGACGAAAAATTTTT--GGTGGTGGTTATTTCGA----- 39 consensus_4648#1 CTACTTCGACCATCATCAAGAAGGTAAAAGGATTTATAAATAGTTGTCTACTCAAGATAC 60 * *** ** *** *** * ** ** ** * consensus_4648#0 -CTAGGTTTAATGGTGATATA-----AAAAACTTTTTTTGTTAAATTTGTA-ACATTAGA 92 consensus_4648#1 TCAATATCCGTTGGTCGGATATCATCAGCAACAGCCTTCAGTAGGAGAGAAGAAATCAGG 120 * * * **** *** * *** ** ** * * * ** ** consensus_4648#0 ---CAGCTTAATTTCCAATTCAATGATTGGGGTAG------CCTATTT---GGAAATCAC 140 consensus_4648#1 TTCCATCTGAAATTAGTAAAAGACGTTGGAGGTGGATAGGACATACATTGAGGAAATTAT 180 ** ** ** ** * * * * * *** * * ** * ****** * consensus_4648#0 CAATGTGTATTACAAGGCAAAACCTAACGTGAAATCCTGAAGAGAAACGAAAAAGAGGAA 200 consensus_4648#1 CAAACTGCACCACAAGGCATGGACTAACGTGAAATCCTGAAGAGAAACGAAAAAGAGGAA 240 *** ** * ******** ************************************* consensus_4648#0 GGCCAAAGAATACACTACGTCGGAATTAAGAAGCACACATGAAAAGGATGAATTGCAACT 260 consensus_4648#1 GGCCAAAGAATACACTACGTCGGAATTAAGAAGCAGACATGAAAAGGATGAATTGCAACT 300 *********************************** ************************ consensus_4648#0 GGAAAGGACTGTCCACGACGGAGTTATATGGAGCATGTTGATGGGTGGCCTATGCTCCCC 320 consensus_4648#1 GGAAAGGACTGTCCACGACGGAGTTAGATGGAGCAT------------------------ 336 ************************** ********* consensus_4648#0 TATGAGGGTAAAAGGCGTAAGTGAATTAGCTGGACAACACTTCAATGTTAAGGCATAAAT 380 consensus_4648#1 ------------------------------------------------------------ consensus_4648#0 TCTGTGGAACATCCTTTTACATATTTCATAGTGTTCTCCAGATTATAGACTAAAAATATC 440 consensus_4648#1 ------------------------------------------------------------ consensus_4648#0 AAAATATGTGAGAATTATCTTGTATATACTATATCATGATCACAACTATGAATTATGTCC 500 consensus_4648#1 ------------------------------------------------------------ consensus_4648#0 AACCAACATTGAAGCGTATTCTATTCACTGACAGTCAATCAGTTGGTTGCGCAGTTTGAT 560 consensus_4648#1 ------------------------------------------------------------ consensus_4648#0 AACGATGATGCTGTTCAGAATCATGTTATCACTTGTTTAGAAGTATATGAAGAATGGGC 619 consensus_4648#1 ----------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||