These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_465#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 418 fasta sequence [TGGGAGTGTCTTTGGCTGTGTGCAAAGCTGGTGCAGCTGAAGATGTTATAATGCCTGCTCCAGCATTCAATGTCATTAATGGTGGCAGTCATGCCGGCAACAAGCTAGCCATGCAAGAATTTATGATTCTGCCTACTGGGGCCAGCTCTTTCACTGAAGCAATGCAAATCGGTACTGAGGTGTACCACAATTTAAAAGCTGTTATCAAACGTGAATATGGACTGGATGCATGCAACGTTGGTGACGAAGGTGGTTTTGCACCGAATATACAGGATAATATGAAAGGTCTTCANCTGCTTGAAGAGGCCATAAAAATTGCTGGCTATACTGGGAAAGTAAAGATTGGTATGGATTGTGCGGCTTCTGAGTTCCATAAGAATGGGAAATATGATTTAAATTTCAAGAACCCTCATTCTGC] [+] EMBL CD183803 [TGGGAGTGTCTTTGGCTGTGTGCAAAGCTGGTGCAGCTGAAGATGTTATAATGCCTGCTCCAGCATTCAATGTCATTAATGGTGGCAGTCATGCCGGCAACAAGCTAGCCATGCAAGAATTTATGATTCTGCCTACTGGGGCCAGCTCTTTCACTGAAGCAATGCAAATCGGTACTGAGGTGTACCACAATTTAAAAGCTGTTATCAAACGTGAATATGGACTGGATGCATGCAACGTTGGTGACGAAGGTGGTTTTGCACCGAATATACAGGATAATATGAAAGGTCTTCANCTGCTTGAAGAGGCCATAAAAATTGCTGGCTATACTGGGAAAGTAAAGATTGGTATGGATTGTGCGGCTTCTGAGTTCCATAAGAATGGGAAATATGATTTAAATTTCAAGAACCCTCATTCTGC] consensusID : consensus_465#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 303 fasta sequence [CGCTTGACGCAACGTGGAACATGTCCTCGCGCGTTGCTAGCTGCACGACACTAACAGCTGAAACCGCCCACGATCGACCCGGGTCAGAGTCCAGTAACCTTGTTTTAATTAGACAGTCGGATTCCCCTGGGTCCGTGCCAGTTCTGACATTAAGCCGATACTCGCGCCACACCAGTGGAATTACACACGTTTGACACATCGTGGAACATGTCCTCGCTCGTTGATATATGCTATAGTGTAACATACTGTAACCGCCCATAATCGTGCCGGTTCATATTCCATTACTCTTATTTTAATTAGACA] [+] EMBL CD148100 [CGCTTGACGCAACGTGGAACATGTCCTCGCGCGTTGCTAGCTGCACGACACTAACAGCTGAAACCGCCCACGATCGACCCGGGTCAGAGTCCAGTAACCTTGTTTTAATTAGACAGTCGGATTCCCCTGGGTCCGTGCCAGTTCTGACATTAAGCCGATACTCGCGCCACACCAGTGGAATTACACACGTTTGACACATCGTGGAACATGTCCTCGCTCGTTGATATATGCTATAGTGTAACATACTGTAACCGCCCATAATCGTGCCGGTTCATATTCCATTACTCTTATTTTAATTAGACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_465#0 TGGGAGTGTCTTTGGCTGTGTGCAAAGCTGGTGCAGCTGAAGATGTTATAATGCCTGCTC 60 consensus_465#1 ---------------------------------------------------CGCTTGACG 9 ** ** consensus_465#0 CAGCATTCAA--TGTCATTAATGGTGGCAGTCATGCCGGCAACAAGCTAGCCATGCAAGA 118 consensus_465#1 CAACGTGGAACATGTCCTCGCGCGTTGCTAGCTGCACGACACTAA--CAGC--TGAAACC 65 ** * * ** **** * ** ** * ** ** ** *** ** ** consensus_465#0 ATTTATGATTCTGCCTACTGGGGCCAGCTCTTTCACTGAAGCAATGCAAATCGGTACTGA 178 consensus_465#1 GCCCACGAT-----CGACCCGGGTCAGAG--TCCAGTAACCTTGTTTTAATTAG-ACAGT 117 * *** * ** *** *** * ** * * * *** * ** * consensus_465#0 GGTGTACCACAATTTAAAAGCTGTTATCAAACGTGAATATGGACTGGATGCATGCAACGT 238 consensus_465#1 CGGATTCCCCTG------GGTCCGTGCCAGTTCTGA-CATTAAGCCGATACTCGCGCC-- 168 * * ** * * * ** *** ** * *** * ** * consensus_465#0 TGGTGACGAAGGTGGTTTTGCACCGAATATACAGGATAATATGAAAGGTCTTCANCTGCT 298 consensus_465#1 -----ACACCAGTGGAATTACACACGTTTGACAC-ATCGTGGAACATGTCCTCGCTCGTT 222 ** **** ** *** * *** ** * * * *** ** * * consensus_465#0 TGAAGAGGCCATAAAAATTGCTGGCTATACTGGGAAAGTAAAGATTGGTATGGATTGTGC 358 consensus_465#1 GATATATGCTATA------GTGTAACATACTGTAACCGCCCATAATCGTGCCGGTT-CAT 275 * * ** *** * ****** * * * * * ** * ** consensus_465#0 GGCTTCTGAGTTCCATAAGAATGGGAAATATGATTTAAATTTCAAGAACCCTCATTCTGC 418 consensus_465#1 ATTCCATTACTCTTATTTTAATTAGACA-------------------------------- 303 * * * ** *** ** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||