cluster # 4654

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Schistosoma mansoni
cluster # 4654 cluster # 4654 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4654#0 length = 589 sequences # 2

consensus_4654#1 length = 215 sequences # 1

consensusID : consensus_4654#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 589
fasta sequence

                              [GATAGTTTTTTTCCGTAGAAGTATAAATACATATCATTACACATGGAGAGCATCTTTATGGTATATACCTGATCACATCCGACAATGATTATATTATACACAGCAAAATACTCAGGATACTAACACTCCCGAAGTTGATGAAGAAGATACATCATCCTTTTTCTCTGAACCGGTAGACTCTTTTTCGCCAGCAATCCTTATTTTATGCTCAGCTTTGTATCTTTGGAGTTCTCGACCTTTTTCTTCAAACTGCTTTGATAATGTTTCAATACATTCAGACATTTTTTTTACACTATCTTCGAGAGCTGGAAGGATGTCCTTGACTTGGCGTTCAATTAACACATTGTCTATCATTCGCATGCATTTACGAGTAGGCT-CCACTGACTGTAACACTTTAATGACCATATTGTGTTCCCTCTGATCAAGTTCTAGATCATTAATTTTGCTCCCGATAGAACGCTGTTCGTAACGTAAACGATTAAAACCTTCCACTACCTCCTCTTCTGTTTGAGGCTTTGCTTTACTAGAGGATGCTGAAGACATCGGTCTAAGTGAAATGTCAGCCGTAGTATACAGTAATCTCATAAAT]

[+] EMBL BF936147             [GATAGTTTTTTTCCGTAGAAGTATAAATACATATCATTACACATGGAGAGCATCTTTATGGTATATACCTGATCACATCCGACAATGATTATATTATACACAGCAAAATACTCAGGATACTAACACTCCCGAAGTTGATGAAGAAGATACATCATCCTTTTTCTCTGAACCGGTAGACTCTTTTTCGCCAGCAATCCTTATTTTATGCTCAGCTTTGTATCTTTGGAGTTCTCGACCTTTTTCTTCAAACTGCTTTGATAATGTTTCAATACATTCAGACATTTTTTTTACACTATCTTCGAGAGCTGGAAGGATGTCCTTGACTTGGCGTTCAATTAACACATTGTCTATCATTCGCATGCATTTACGAGTAGGCT CCACTGACTGTAACACTTTAATGACCATATTGTGTTCCCTCTGATCAAGTTCTAGATCATTAATTTTGCTCCCGATAGAACGCTGTTCGTAACGTAAACGATTAAAACCTTCCACTACCTCCTCTTCTGTTTGAGGCTTTGCTTTACTAGAGGATGCTGAAGACATCGGTCTAAGTGAAATGTCAGCCGTAGTATACAGTAATCTCATAAAT]
[+] EMBL CD144191             [                                                                                                               TCAGGATACTAACACTCCCGAAGTTGATGAAGAAGATACATCATCCTTTTTCTCTGAACCGGTAGACTCTTTTTCGCCAGCAATCCTTATTTTATGCTCAGCTTTGTATCTTTGGAGTTCTCGACCTTTTTCTTCAAACTGCTTTGATAATGTTTCAATACATTCAGACATTTTTTTTACACTATCTTCGAGAGCTGGAAGGATGTCCTTGACTTGGCGTTCAATTAACACATTGTCTATCATTCGCATGCATTTACGAGTAGGCTCCCACTGACTGTAACACTCTAATG                                                                                                                                                                                             ]




>consensus_4654#0
GATAGTTTTTTTCCGTAGAAGTATAAATACATATCATTACACATGGAGAGCATCTTTATG
GTATATACCTGATCACATCCGACAATGATTATATTATACACAGCAAAATACTCAGGATAC
TAACACTCCCGAAGTTGATGAAGAAGATACATCATCCTTTTTCTCTGAACCGGTAGACTC
TTTTTCGCCAGCAATCCTTATTTTATGCTCAGCTTTGTATCTTTGGAGTTCTCGACCTTT
TTCTTCAAACTGCTTTGATAATGTTTCAATACATTCAGACATTTTTTTTACACTATCTTC
GAGAGCTGGAAGGATGTCCTTGACTTGGCGTTCAATTAACACATTGTCTATCATTCGCAT
GCATTTACGAGTAGGCTCCACTGACTGTAACACTTTAATGACCATATTGTGTTCCCTCTG
ATCAAGTTCTAGATCATTAATTTTGCTCCCGATAGAACGCTGTTCGTAACGTAAACGATT
AAAACCTTCCACTACCTCCTCTTCTGTTTGAGGCTTTGCTTTACTAGAGGATGCTGAAGA
CATCGGTCTAAGTGAAATGTCAGCCGTAGTATACAGTAATCTCATAAAT

consensusID : consensus_4654#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 215
fasta sequence

                              [ACTTTAATGACCATATTGTGTTCCCTCTGATCAAGTTCTAGATCATTAATTTTGCTCCCGATAGAACGCTGTTCGTAACGTAAACGATTAAAACCTTCCACTACCTCCTCTTCTGTTTGAGGCTTTGCTTTACTAGAGGATGCTGAAGACATCGGTCTAAGTGAAATGTCAGCCGTAGTATACAGCCTCACAGTACCGTACGTTAGATGTGAGGA]

[-] EMBL CD153741             [ACTTTAATGACCATATTGTGTTCCCTCTGATCAAGTTCTAGATCATTAATTTTGCTCCCGATAGAACGCTGTTCGTAACGTAAACGATTAAAACCTTCCACTACCTCCTCTTCTGTTTGAGGCTTTGCTTTACTAGAGGATGCTGAAGACATCGGTCTAAGTGAAATGTCAGCCGTAGTATACAGCCTCACAGTACCGTACGTTAGATGTGAGGA]




>consensus_4654#1
ACTTTAATGACCATATTGTGTTCCCTCTGATCAAGTTCTAGATCATTAATTTTGCTCCCG
ATAGAACGCTGTTCGTAACGTAAACGATTAAAACCTTCCACTACCTCCTCTTCTGTTTGA
GGCTTTGCTTTACTAGAGGATGCTGAAGACATCGGTCTAAGTGAAATGTCAGCCGTAGTA
TACAGCCTCACAGTACCGTACGTTAGATGTGAGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4654#0      GATAGTTTTTTTCCGTAGAAGTATAAATACATATCATTACACATGGAGAGCATCTTTATG 60
consensus_4654#1      ------------------------------------------------------------
                                                                                  

consensus_4654#0      GTATATACCTGATCACATCCGACAATGATTATATTATACACAGCAAAATACTCAGGATAC 120
consensus_4654#1      ------------------------------------------------------------
                                                                                  

consensus_4654#0      TAACACTCCCGAAGTTGATGAAGAAGATACATCATCCTTTTTCTCTGAACCGGTAGACTC 180
consensus_4654#1      ------------------------------------------------------------
                                                                                  

consensus_4654#0      TTTTTCGCCAGCAATCCTTATTTTATGCTCAGCTTTGTATCTTTGGAGTTCTCGACCTTT 240
consensus_4654#1      ------------------------------------------------------------
                                                                                  

consensus_4654#0      TTCTTCAAACTGCTTTGATAATGTTTCAATACATTCAGACATTTTTTTTACACTATCTTC 300
consensus_4654#1      ------------------------------------------------------------
                                                                                  

consensus_4654#0      GAGAGCTGGAAGGATGTCCTTGACTTGGCGTTCAATTAACACATTGTCTATCATTCGCAT 360
consensus_4654#1      ------------------------------------------------------------
                                                                                  

consensus_4654#0      GCATTTACGAGTAGGCTCCACTGACTGTAACACTTTAATGACCATATTGTGTTCCCTCTG 420
consensus_4654#1      -------------------------------ACTTTAATGACCATATTGTGTTCCCTCTG 29
                                                     *****************************

consensus_4654#0      ATCAAGTTCTAGATCATTAATTTTGCTCCCGATAGAACGCTGTTCGTAACGTAAACGATT 480
consensus_4654#1      ATCAAGTTCTAGATCATTAATTTTGCTCCCGATAGAACGCTGTTCGTAACGTAAACGATT 89
                      ************************************************************

consensus_4654#0      AAAACCTTCCACTACCTCCTCTTCTGTTTGAGGCTTTGCTTTACTAGAGGATGCTGAAGA 540
consensus_4654#1      AAAACCTTCCACTACCTCCTCTTCTGTTTGAGGCTTTGCTTTACTAGAGGATGCTGAAGA 149
                      ************************************************************

consensus_4654#0      CATCGGTCTAAGTGAAATGTCAGCCGTAGTATACAGT-----AATCTCATAAAT------ 589
consensus_4654#1      CATCGGTCTAAGTGAAATGTCAGCCGTAGTATACAGCCTCACAGTACCGTACGTTAGATG 209
                      ************************************      * *  * **  *      

consensus_4654#0      ------
consensus_4654#1      TGAGGA 215