These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4665#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 434 fasta sequence [TAGAGGATCCCCCGCGATTGGCGACATCAAATACGCCTTCACCAA-CTTCACCATATTCCGCC-TCCATCTCACCGA-CA-CGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCGACTCGGCTTGTGTCGCATCTTCTTCTAATAGGAGTAGACGTCGTCTACTTCATCATGGTGGTCGTATGGATTTCTGCTGGTGATAAGAATGGAGTTAGAGGCCATCAATATTCGTCAGATGGCACCATCCGTGGCAGATTGCTCTCGATTATTAATATCTGAGGCTTCATCAGTATGCTTGGTTT] [+] EMBL CD064893 [TAGAGGATCCCCCGCGATTGGCGACATCAAATACGCCTTCACCAA CTTCACCATATTCCGCC TCCATCTCACCGA CA CGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCGACTCGGCTT ] [+] EMBL CD065582 [ CTTCACCAAGCTTCACCATATTCCGCCGTCCATCTCACCGATCAGCGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCGACTCGGCTAGTGTCGCATCTTCTTCTAATAGGAGTAGACGTCGTCTACTTCATCATGGTGGTCGTATGGATTTCTGCTGGTGATAAGAATGGAGTTAGAGGCCATCAATATTCGTCAGATGGCACCATCCGTGGCAGATTGCTCTCGATTATTAATATCTGAGGCTTCATCAGTATGCTTGGTTT] consensusID : consensus_4665#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 180 fasta sequence [GCTGCTCCAACTTGACGGACATTCAAATACGCCTTCACCAAACTTCACATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTACAGTCTCTGCAATCGCCTCAGAATCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTC] [+] EMBL CD063979 [GCTGCTCCAACTTGACGGACATTCAAATACGCCTTCACCAAACTTCACATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTACAGTCTCTGCAATCGCCTCAGAATCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4665#0 TAGAGGATCCCCCGCGATTGGCGACATCAAATACGCCTTCACCAACTTCACCATATTCCG 60 consensus_4665#1 --GCTGCTCCAACTTGACGGACA--TTCAAATACGCCTTCACCAAACTTCACATATTCCG 56 * * *** * ** * * ******************* * ********* consensus_4665#0 CCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTG 120 consensus_4665#1 CCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTACAGTCTCTG 116 ************************************************** ********* consensus_4665#0 CAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCT 180 consensus_4665#1 CAATCGCCTCAGAATCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCT 176 *** ********* ********************************************** consensus_4665#0 GTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTT 240 consensus_4665#1 GTTC-------------------------------------------------------- 180 **** consensus_4665#0 CGACTGCCGACTCGGCTTGTGTCGCATCTTCTTCTAATAGGAGTAGACGTCGTCTACTTC 300 consensus_4665#1 ------------------------------------------------------------ consensus_4665#0 ATCATGGTGGTCGTATGGATTTCTGCTGGTGATAAGAATGGAGTTAGAGGCCATCAATAT 360 consensus_4665#1 ------------------------------------------------------------ consensus_4665#0 TCGTCAGATGGCACCATCCGTGGCAGATTGCTCTCGATTATTAATATCTGAGGCTTCATC 420 consensus_4665#1 ------------------------------------------------------------ consensus_4665#0 AGTATGCTTGGTTT 434 consensus_4665#1 -------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||