cluster # 4665

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Schistosoma mansoni
cluster # 4665 cluster # 4665 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4665#0 length = 434 sequences # 2

consensus_4665#1 length = 180 sequences # 1

consensusID : consensus_4665#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 434
fasta sequence

                              [TAGAGGATCCCCCGCGATTGGCGACATCAAATACGCCTTCACCAA-CTTCACCATATTCCGCC-TCCATCTCACCGA-CA-CGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCGACTCGGCTTGTGTCGCATCTTCTTCTAATAGGAGTAGACGTCGTCTACTTCATCATGGTGGTCGTATGGATTTCTGCTGGTGATAAGAATGGAGTTAGAGGCCATCAATATTCGTCAGATGGCACCATCCGTGGCAGATTGCTCTCGATTATTAATATCTGAGGCTTCATCAGTATGCTTGGTTT]

[+] EMBL CD064893             [TAGAGGATCCCCCGCGATTGGCGACATCAAATACGCCTTCACCAA CTTCACCATATTCCGCC TCCATCTCACCGA CA CGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCGACTCGGCTT                                                                                                                                                                                ]
[+] EMBL CD065582             [                                    CTTCACCAAGCTTCACCATATTCCGCCGTCCATCTCACCGATCAGCGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTGCAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTTCGACTGCCGACTCGGCTAGTGTCGCATCTTCTTCTAATAGGAGTAGACGTCGTCTACTTCATCATGGTGGTCGTATGGATTTCTGCTGGTGATAAGAATGGAGTTAGAGGCCATCAATATTCGTCAGATGGCACCATCCGTGGCAGATTGCTCTCGATTATTAATATCTGAGGCTTCATCAGTATGCTTGGTTT]




>consensus_4665#0
TAGAGGATCCCCCGCGATTGGCGACATCAAATACGCCTTCACCAACTTCACCATATTCCG
CCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTG
CAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCT
GTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTT
CGACTGCCGACTCGGCTTGTGTCGCATCTTCTTCTAATAGGAGTAGACGTCGTCTACTTC
ATCATGGTGGTCGTATGGATTTCTGCTGGTGATAAGAATGGAGTTAGAGGCCATCAATAT
TCGTCAGATGGCACCATCCGTGGCAGATTGCTCTCGATTATTAATATCTGAGGCTTCATC
AGTATGCTTGGTTT

consensusID : consensus_4665#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 180
fasta sequence

                              [GCTGCTCCAACTTGACGGACATTCAAATACGCCTTCACCAAACTTCACATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTACAGTCTCTGCAATCGCCTCAGAATCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTC]

[+] EMBL CD063979             [GCTGCTCCAACTTGACGGACATTCAAATACGCCTTCACCAAACTTCACATATTCCGCCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTACAGTCTCTGCAATCGCCTCAGAATCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTC]




>consensus_4665#1
GCTGCTCCAACTTGACGGACATTCAAATACGCCTTCACCAAACTTCACATATTCCGCCTC
CATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTACAGTCTCTGCAAT
CGCCTCAGAATCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCTGTTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4665#0      TAGAGGATCCCCCGCGATTGGCGACATCAAATACGCCTTCACCAACTTCACCATATTCCG 60
consensus_4665#1      --GCTGCTCCAACTTGACGGACA--TTCAAATACGCCTTCACCAAACTTCACATATTCCG 56
                        *  * ***  *  **  * *    *******************  *   *********

consensus_4665#0      CCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTGCAGTCTCTG 120
consensus_4665#1      CCTCCATCTCACCGACACGCTCAACCAATCGTTCCCGTTCCGGTTGTGCTACAGTCTCTG 116
                      ************************************************** *********

consensus_4665#0      CAAGCGCCTCAGACTCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCT 180
consensus_4665#1      CAATCGCCTCAGAATCCAATTCGACTGGAGCGAACACAGACACACGTTCCGATTCAACCT 176
                      *** ********* **********************************************

consensus_4665#0      GTTCTACCACTTCACTTTCTGCGTCCGCTTCAACTTGCCCCAATGTCTCACCGAACACTT 240
consensus_4665#1      GTTC-------------------------------------------------------- 180
                      ****                                                        

consensus_4665#0      CGACTGCCGACTCGGCTTGTGTCGCATCTTCTTCTAATAGGAGTAGACGTCGTCTACTTC 300
consensus_4665#1      ------------------------------------------------------------
                                                                                  

consensus_4665#0      ATCATGGTGGTCGTATGGATTTCTGCTGGTGATAAGAATGGAGTTAGAGGCCATCAATAT 360
consensus_4665#1      ------------------------------------------------------------
                                                                                  

consensus_4665#0      TCGTCAGATGGCACCATCCGTGGCAGATTGCTCTCGATTATTAATATCTGAGGCTTCATC 420
consensus_4665#1      ------------------------------------------------------------
                                                                                  

consensus_4665#0      AGTATGCTTGGTTT 434
consensus_4665#1      --------------