These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4678#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence [CTGGCTGCCCGGGATTCGATGGCCGAACCTGAGTTGGTTCATATCGCCAAACTTGCTGAGCAGGCTGAACGGTATGATGATATGGCTGCAGCTATGAAGCGTTATACTGAGGCATCGGGGAATTTAGGAAACGAAGAACGGAATTTACTATCAGTGGCATATAAAAATGTTGTAGGTGCTCGAAGATCAGCATGGAGAGTAATACATGGAAGCGAAATGAAAGCGGTAAATGACCGTACCAAAAAACAAATTGCAGAGGAATACCGCATTAAAATGGAAAAGGAGTTGAACACAATATGTAATCAGGTTCTGGCTCTTCTTGAAGATTATCTGCTTCCAAATGCAAGTCCCGACGACAGTAAAGTTTTCTTCTTGAAAATGCAAGGCGATTACTACCGGTATCTCGCTGAGGTTGCCACTGATGATGCTCGGACAGAAGTGGTCCAGAAATCATTGGATGCTTACACAAAGGCTACTACGGCTGCCGAAAATTTACCTACCACTCATCCAATTCGTCTTGGTTTAGCTCTCAACTTCTCTGTATTCTTTTACGAAATTCAAAATGATGCTGCTAAGGCGTGCGAGTTAGCCAAAAGTGCTTTCGATTCAGCAATAGCAGAACTAGATCAGCTTCAAGATGATTCCTACAAAGACAGCACACTAATTATGCAA] [+] EMBL CD180196 [CTGGCTGCCCGGGATTCGATGGCCGAACCTGAGTTGGTTCATATCGCCAAACTTGCTGAGCAGGCTGAACGGTATGATGATATGGCTGCAGCTATGAAGCGTTATACTGAGGCATCGGGGAATTTAGGAAACGAAGAACGGAATTTACTATCAGTGGCATATAAAAATGTTGTAGGTGCTCGAAGATCAGCATGGAGAGTAATACATGGAAGCGAAATGAAAGCGGTAAATGACCGTACCAAAAAACAAATTGCAGAGGAATACCGCATTAAAATGGAAAAGGAGTTGAACACAATATGTAATCAGGTTCTGGCTCTTCTTGAAGATTATCTGCTTCCAAATGCAAGTCCCGACGACAGTAAAGTTTTCTTCTTGAAAATGCAAGGCGATTACTACCGGTATCTCGCTGAGGTTGCCACTGATGATGCTCGGACAGAAGTGGTCCAGAAATCATTGGATGCTTACACAAAGGCTACTACGGCTGCCGAAAATTTACCTACCACTCATCCAATTCGTCTTGGTTTAGCTCTCAACTTCTCTGTATTCTTTTACGAAATTCAAAATGATGCTGCTAAGGCGTGCGAGTTAGCCAAAAGTGCTTTCGATTCAGCAATAGCAGAACTAGATCAGCTTCAAGATGATTCCTACAAAGACAGCACACTAATTATGCAA] consensusID : consensus_4678#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 330 fasta sequence [GCTTTACTCAACATTATGCTGCATTCTCTGTTTTGATAACAGATAAATAGAAATTAAATAGGAATAATATATTTGTAAAATCTCAGAGAATGAATTTTAATTAAATCCAACGTTTCGCCTGGCAATCTGGTCCAAGCTTTTTCAAGGAATAAATAGAAAGCCTATCTTTCTGAGATTAATTTAATGAGGATCTAGCTACCCACGTCCTATATAACAAACTTTTAACGTAGCATACCTTACTTGTTTACTTTTCAACGGATGTAATGTGTTTACTCAAAAAAGAACACTCAAAAACACTTTATTCTTCTACTTCGATATGCATTTACTAAT] [+] EMBL CD122586 [GCTTTACTCAACATTATGCTGCATTCTCTGTTTTGATAACAGATAAATAGAAATTAAATAGGAATAATATATTTGTAAAATCTCAGAGAATGAATTTTAATTAAATCCAACGTTTCGCCTGGCAATCTGGTCCAAGCTTTTTCAAGGAATAAATAGAAAGCCTATCTTTCTGAGATTAATTTAATGAGGATCTAGCTACCCACGTCCTATATAACAAACTTTTAACGTAGCATACCTTACTTGTTTACTTTTCAACGGATGTAATGTGTTTACTCAAAAAAGAACACTCAAAAACACTTTATTCTTCTACTTCGATATGCATTTACTAAT] [+] EMBL CD122620 [GCTTTACTCAACATTATGCTGCATTCTCTGTTTTGATAACAGATAAATAGAAATTAAATAGGAATAATATATTTGTAAAATCTCAGAGAATGAATTTTAATTAAATCCAACGTTTCGCCTGGCAATCTGGTCCAAGCTTTTTCAAGGAATAAATAGAAAGCCTATCTTTCTGAGATTAATTTAATGAGGATCTAGCTACCCACGTCCTATATAACAAACTTTTAACGTAGCATACCTTACTTGTTTACTTTTCAACGGATGTAATGTGTTTACTCAAAAAAGAACACTCAAAAACACTTTATTCTTCTACTTCGATATGCATTTACTAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4678#0 CTGGCTGCCCGGGATTCGATGGCCGAACCTGAGTTGGTTCATATCGCCAAACTTGCTGAG 60 consensus_4678#1 ------------------------------------------------------------ consensus_4678#0 CAGGCTGAACGGTATGATGATATGGCTGCAGCTATGAAGCGTTATACTGAGGCATCGGGG 120 consensus_4678#1 ------------------------------------------------------------ consensus_4678#0 AATTTAGGAAACGAAGAACGGAATTTACTATCAGTGGCATATAAAAATGTTGTAGGTGCT 180 consensus_4678#1 ------------------------------------------------------------ consensus_4678#0 CGAAGATCAGCATGGAGAGTAATACATGGAAGCGAAATGAAAGCGGTAAATGACCGTACC 240 consensus_4678#1 ----------------------------------------------------GCTTTACT 8 * *** consensus_4678#0 AAAAAACAAATTGCAGAGGAATACCGCATTAAAATGGAAAAGGAGTTGAACACAATATGT 300 consensus_4678#1 CAACATTATGCTGCATTCTCTGTTTTGATAACAGATAAATAGAAATTAAATAGGA---AT 65 ** * * **** ** * * ** ** * ** ** * * * consensus_4678#0 AATCAGGTTCTGGCTCTTCTTGAAGATTATCTGCTTCCAAATGCAA-GTCCCGAC-GACA 358 consensus_4678#1 AATATATTTGTAAAATCTCA-GAGAATGAATTTTAATTAAATCCAACGTTTCGCCTGGCA 124 *** ** * ** ** ** * * **** *** ** ** * * ** consensus_4678#0 GTAAAGTTTT--CTTCTTGAAAATGCAAGGCGATTACTACCGGTATCTCGCTGAGGTTGC 416 consensus_4678#1 ATCTGGTCCAAGCTTTTTCAAGGAATAAATAGAAAGCC-----TATCTTTCTGAGATTAA 179 * ** *** ** ** ** ** * ***** ***** ** consensus_4678#0 CACTGATGATGCTCGGACAGAAGTGGTCCAGAAATCATTGGATGCTTACACAAAGGCTAC 476 consensus_4678#1 T-TTAATGAGGATCTAGCTACCCACGTCCTATA--TAACAAACTTTTA-ACGTAGCATAC 235 * **** * ** * **** * * * *** ** ** *** consensus_4678#0 TACGGCTGCCGAAAATTTACCTACCACTCATCCAATTCGTCTTGGTTTAGCTCTCAACTT 536 consensus_4678#1 CTTACTTGTTTACTTTTCAACGGATG-TAATGTGTTTACTCAAAAAAGAACACTCAAAAA 294 ** * ** * * * ** ** ** * * ***** consensus_4678#0 CTCTGTATTCTTTTACGAAATTCAAAATGATGCTGCTAAGGCGTGCGAGTTAGCCAAAAG 596 consensus_4678#1 CACTTTATTCTTCTAC----TTCGATATGCATTTACTAAT-------------------- 330 * ** ******* *** *** * *** * **** consensus_4678#0 TGCTTTCGATTCAGCAATAGCAGAACTAGATCAGCTTCAAGATGATTCCTACAAAGACAG 656 consensus_4678#1 ------------------------------------------------------------ consensus_4678#0 CACACTAATTATGCAA 672 consensus_4678#1 ---------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||