These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4695#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 658 fasta sequence [GAGCCCGGTACCCTGCCTGCACCGACTGCTCCTCAGAATGCATACACGACGAGCACAAGCCTATTGTGTCGGTTGGTTCTCCGACCTGACTTGTGAGTGTGGAGACTCAAGCGACAGACAGCGTGTCTTGGTTGGCTACTGACACATTGTCAACTTCAGGATTTACCTATCCGTCGACCGTAGACCAGTCGACCATGAGTGCAGTGGAGATGACGAGAGAGAAGCTAGTGAGTTCAAGTTTGTGTGAAGATAAGTCGAATGTGGTTGGTCAACTGCGTGAAGAGTTGGCGTCTTGTTATGAACAGATAGTGAAGCTGTCTAAATCGGTAGAGGAGAGAGATGCTTCGTTGATGGATGTTCGGCGTTTGTTGACTGTGAAGGAGAGTGAAGTTGCGGATCTGAGAGAAGAGAAGTGTCATTTGCGAGACGAAGTGAATGAGTTGAGGGAGACTGTGGAGGCAGAACGACGTGATTTGGACATTATGCGTGCCAATGTGGATGTGTTGGAGAGGAAGGAAGAGGTGTCGGCGATGTACGTGGAGAGTCGTGGACCGAACACTGCTGCTGTGGAGGAGGAGTGTGTGCAAACGGAGATTGAGGACGACGTTTATGACCTAGTGTCGTCTCTGCAGGTCGAGGTTGCCCATCTGCGTGAGGA] [+] EMBL CD168550 [GAGCCCGGTACCCTGCCTGCACCGACTGCTCCTCAGAATGCATACACGACGAGCACAAGCCTATTGTGTCGGTTGGTTCTCCGACCTGACTTGTGAGTGTGGAGACTCAAGCGACAGACAGCGTGTCTTGGTTGGCTACTGACACATTGTCAACTTCAGGATTTACCTATCCGTCGACCGTAGACCAGTCGACCATGAGTGCAGTGGAGATGACGAGAGAGAAGCTAGTGAGTTCAAGTTTGTGTGAAGATAAGTCGAATGTGGTTGGTCAACTGCGTGAAGAGTTGGCGTCTTGTTATGAACAGATAGTGAAGCTGTCTAAATCGGTAGAGGAGAGAGATGCTTCGTTGATGGATGTTCGGCGTTTGTTGACTGTGAAGGAGAGTGAAGTTGCGGATCTGAGAGAAGAGAAGTGTCATTTGCGAGACGAAGTGAATGAGTTGAGGGAGACTGTGGAGGCAGAACGACGTGATTTGGACATTATGCGTGCCAATGTGGATGTGTTGGAGAGGAAGGAAGAGGTGTCGGCGATGTACGTGGAGAGTCGTGGACCGAACACTGCTGCTGTGGAGGAGGAGTGTGTGCAAACGGAGATTGAGGACGACGTTTATGACCTAGTGTCGTCTCTGCAGGTCGAGGTTGCCCATCTGCGTGAGGA] consensusID : consensus_4695#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 492 fasta sequence [CACGAGTCACGGTGGACATTTCCACGAGTC-ACGGTTGGAGCGACTACTCCTCAGAATGCATACACGACGAGCACAAGCCTAGTGTGTCGGTTGGTTCTCCGACCAGACTTGTGAGTGTGGAGACTCAAGCGACAGACAGCGTGTCTTGGTTGGCTACTGACACATTGTCAACTTCAGGATTTACCTATCCGTCGACCGTAGAC--GTCGACCATGAGTGCAGTGGAGATGACGAGAGAGAGGCTAGTGAGTTCAAGTTTGTGTGAAGATAAGTCGAATGTGGTTAGTCAACTGCGTGAAGAGTTGGCGTCTTGTTATGAACAGATAGTGAAGCTGTCTAGATCGGTTGAGGAGAGTGATGCTTCGTTGATGGATGTTCGGCGTTTGTTGACTGTGAAGGAGAGTGAAGTTGCGGATCTGAGAGAAGAGAAGCGTCATTTGCGAGACGAAGTGAATGAGTTGAGGGAGACTATGGAGGCAGAACGACGTGATTTG] [-] EMBL CD068586 [CACGAGTCACGGTGGACATTTCCACGAGTC ACGGTTGGAGCGACTACTCCTCAGAATGCATACACGACGAGCACAAGCCTAGTGTGTCGGTTGGTTCTCCGACCAGACTTGTGAGTGTGGAGACTCAAGCGACAGACAGCGTGTCTTGGTTGGCTACTGACACATTGTCAACTTCAGGATTTACCTATCCGTCGACCGTAGAC GTCGACCATGAGTG ] [+] EMBL CD170991 [ agctttCGAGACGACGCCT CAGCGACTACTCCTCAGAATGCATACACGACGAGCACAAGCCTAATGTGTCGGTTGGTTCTCCGACCAGACTTGTGAGTGTGGAGACCCAAGCGACAGACAGCGTGTCTTGGTTGGCTACTGACACATTGTCAACTTCAGGATTTACCTATCCGTCGACCGTAGACCAGTCGACCATGAGTGCAGTGGAGATGACGAGAGAGAGGCTAGTGAGTTCAAGTTTGTGTGAAGATAAGTCGAATGTGGTTAGTCAACTGCGTGAAGAGTTGGCGTCTTGTTATGAACAGATAGTGAAGCTGTCTAGATCGGTTGAGGAGAGTGATGCTTCGTTGATGGATGTTCGGCGTTTGTTGACTGTGAAGGAGAGTGAAGTTGCGGATCTGAGAGAAGAGAAGCGTCATTTGCGAGACGAAGTGAATGAGTTGAGGGAGACTATGGAGGCAGAACGACGTGATTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4695#0 ------------------GAGCCCGGTACCCTGCCTGCACCGACTGCTCCTCAGAATGCA 42 consensus_4695#1 CACGAGTCACGGTGGACATTTCCACGAGTCACGGTTGGAGCGACTACTCCTCAGAATGCA 60 ** * * * ** * ***** ************** consensus_4695#0 TACACGACGAGCACAAGCCTATTGTGTCGGTTGGTTCTCCGACCTGACTTGTGAGTGTGG 102 consensus_4695#1 TACACGACGAGCACAAGCCTAGTGTGTCGGTTGGTTCTCCGACCAGACTTGTGAGTGTGG 120 ********************* ********************** *************** consensus_4695#0 AGACTCAAGCGACAGACAGCGTGTCTTGGTTGGCTACTGACACATTGTCAACTTCAGGAT 162 consensus_4695#1 AGACTCAAGCGACAGACAGCGTGTCTTGGTTGGCTACTGACACATTGTCAACTTCAGGAT 180 ************************************************************ consensus_4695#0 TTACCTATCCGTCGACCGTAGACCAGTCGACCATGAGTGCAGTGGAGATGACGAGAGAGA 222 consensus_4695#1 TTACCTATCCGTCGACCGTAGAC--GTCGACCATGAGTGCAGTGGAGATGACGAGAGAGA 238 *********************** *********************************** consensus_4695#0 AGCTAGTGAGTTCAAGTTTGTGTGAAGATAAGTCGAATGTGGTTGGTCAACTGCGTGAAG 282 consensus_4695#1 GGCTAGTGAGTTCAAGTTTGTGTGAAGATAAGTCGAATGTGGTTAGTCAACTGCGTGAAG 298 ******************************************* *************** consensus_4695#0 AGTTGGCGTCTTGTTATGAACAGATAGTGAAGCTGTCTAAATCGGTAGAGGAGAGAGATG 342 consensus_4695#1 AGTTGGCGTCTTGTTATGAACAGATAGTGAAGCTGTCTAGATCGGTTGAGGAGAGTGATG 358 *************************************** ****** ******** **** consensus_4695#0 CTTCGTTGATGGATGTTCGGCGTTTGTTGACTGTGAAGGAGAGTGAAGTTGCGGATCTGA 402 consensus_4695#1 CTTCGTTGATGGATGTTCGGCGTTTGTTGACTGTGAAGGAGAGTGAAGTTGCGGATCTGA 418 ************************************************************ consensus_4695#0 GAGAAGAGAAGTGTCATTTGCGAGACGAAGTGAATGAGTTGAGGGAGACTGTGGAGGCAG 462 consensus_4695#1 GAGAAGAGAAGCGTCATTTGCGAGACGAAGTGAATGAGTTGAGGGAGACTATGGAGGCAG 478 *********** ************************************** ********* consensus_4695#0 AACGACGTGATTTGGACATTATGCGTGCCAATGTGGATGTGTTGGAGAGGAAGGAAGAGG 522 consensus_4695#1 AACGACGTGATTTG---------------------------------------------- 492 ************** consensus_4695#0 TGTCGGCGATGTACGTGGAGAGTCGTGGACCGAACACTGCTGCTGTGGAGGAGGAGTGTG 582 consensus_4695#1 ------------------------------------------------------------ consensus_4695#0 TGCAAACGGAGATTGAGGACGACGTTTATGACCTAGTGTCGTCTCTGCAGGTCGAGGTTG 642 consensus_4695#1 ------------------------------------------------------------ consensus_4695#0 CCCATCTGCGTGAGGA 658 consensus_4695#1 ---------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||