cluster # 4713

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Schistosoma mansoni
cluster # 4713 cluster # 4713 Sequences # 3 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4713#0 length = 456 sequences # 2

consensus_4713#1 length = 413 sequences # 1

consensusID : consensus_4713#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 456
fasta sequence

                              [AACAACAATAATTATAACAATTACAAAACAAACCTTCAATTTTGTAGGTTCCCGGAGAAAAAACTCCCAAATACCAAACCAATGACAAAAGAAACCAAAATGTCCGAAAAGAATGATATAAACAAACAAGTCCAAAGGTTGAGTAAGACAAACACATCCAAAAACACAGTAAAATTGATGTACAGTAAAAAGGTTTTAATCGGCCAAATGTCTTCAGTTGATCCGTAACACTCCCGACCATAAGAACCTTGATTCTTTTCACAGACAAGTAAATAGGTAGCAGGAACCCAAGTATATACATCACAAACAACCAANAACAAGCATTCAACACACCAACAACCTCGTGATCCCTAGGACTTACACCAGTACGCCTAGGAATCCGAGTAGCTAGCTACCACCTATAGCTTCAAGAAGACACAGTTTTCTAATATCTCTCACTAGGATCCCCTTTCTTGT]

[+] EMBL CD143224             [AACAACAATAATTATAACAATTACAAAACAAACCTTCAATTTTGTAGGTTCCCGGAGAAAAAACTCCCAAATACCAAACCAATGACAAAAGAAACCAAAATGTCCGAAAAGAATGATATAAACAAACAAGTCCAAAGGTTGAGTAAGACAAACACATCCAAAAACACAGTAAAATTGATGTACAGTAAAAAGGTTTTAATCGGCCAAATGTCTTCAGTTGATCCGTAACACTCCCGACCATAAGAACCTTGATTCTTTTCACAGACAAGTAAATAGGTAGCAGGAACCCAAGTATATACATCACAAACAACCAANAACAAGCATTCAACACACCAACAACCTCGTGATCCCTAGGACTTACACCAGTACGCCTAGGAATCCGAGTAGCTAGC                                                                ]
[+] EMBL CD127731             [                                                          AAAATCTCCCAAATACCAAACCAATGACAAAAGAAACCAAAATGTCCGAAAAGAATGATATAAACAAACAAGTCCAAAGGTTAAGTAAAACAAACACATCCAAAAACACAGT AAATTGCTGTGCAGTAAAAAGGTTTTAATCGGCCAAATGTCTTCAGTTCTCCCGTAACACTCCCGACCAAAAGAACCTTGGTTCTTTTCACAGACGAGTAAATAGGTAGCA GAAGCGAAGTATATACATCACAAACAACCAACAACAAGCATTCAACACACTAACAACCTCGTGATCCCTAGGACTTACACCAGTACGCCTAGGGATCCGAGTAGCTACCTACCACCTATAGCTTCAAGAAGACACAGTTTTCTAATATCTCTCACTAGGATCCCCTTTCTTGT]




>consensus_4713#0
AACAACAATAATTATAACAATTACAAAACAAACCTTCAATTTTGTAGGTTCCCGGAGAAA
AAACTCCCAAATACCAAACCAATGACAAAAGAAACCAAAATGTCCGAAAAGAATGATATA
AACAAACAAGTCCAAAGGTTGAGTAAGACAAACACATCCAAAAACACAGTAAAATTGATG
TACAGTAAAAAGGTTTTAATCGGCCAAATGTCTTCAGTTGATCCGTAACACTCCCGACCA
TAAGAACCTTGATTCTTTTCACAGACAAGTAAATAGGTAGCAGGAACCCAAGTATATACA
TCACAAACAACCAANAACAAGCATTCAACACACCAACAACCTCGTGATCCCTAGGACTTA
CACCAGTACGCCTAGGAATCCGAGTAGCTAGCTACCACCTATAGCTTCAAGAAGACACAG
TTTTCTAATATCTCTCACTAGGATCCCCTTTCTTGT

consensusID : consensus_4713#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 413
fasta sequence

                              [TTTTTTTTTTTTTTTTTTTACGTTCGCCATTTATATTTGATCACAAGCAAACTTTTACACATTGATAGCAAAACCAAACCTAAAATAAATGTTTATAGTTCATCCACAGACACACGAATATCGTCAATCTTTAATATCATTTTACAAAGTTGAACAGCTAGCATGATTTGAGCGCGCTTGGAACTTAGTGTTTCAAGGACGTTTTGATGATACATATCATTAGTACCAACATTCAGACAGTCTACTCCAAGACGAGGATTATGTTCGCATAATTGCCGTGCTTTCAGTTCAGAGACTGTAACAATTGGTGGCAAACCTGAATTCTCAGCTAAAGCCATTGGAATCGCCTCTAAAGCATCAGCAAACGCTCGCATAGCATACGGCTCAAGACCTTCAATCTTGGCAGCTTTAAG]

[+] EMBL AI395319             [TTTTTTTTTTTTTTTTTTTACGTTCGCCATTTATATTTGATCACAAGCAAACTTTTACACATTGATAGCAAAACCAAACCTAAAATAAATGTTTATAGTTCATCCACAGACACACGAATATCGTCAATCTTTAATATCATTTTACAAAGTTGAACAGCTAGCATGATTTGAGCGCGCTTGGAACTTAGTGTTTCAAGGACGTTTTGATGATACATATCATTAGTACCAACATTCAGACAGTCTACTCCAAGACGAGGATTATGTTCGCATAATTGCCGTGCTTTCAGTTCAGAGACTGTAACAATTGGTGGCAAACCTGAATTCTCAGCTAAAGCCATTGGAATCGCCTCTAAAGCATCAGCAAACGCTCGCATAGCATACGGCTCAAGACCTTCAATCTTGGCAGCTTTAAG]




>consensus_4713#1
TTTTTTTTTTTTTTTTTTTACGTTCGCCATTTATATTTGATCACAAGCAAACTTTTACAC
ATTGATAGCAAAACCAAACCTAAAATAAATGTTTATAGTTCATCCACAGACACACGAATA
TCGTCAATCTTTAATATCATTTTACAAAGTTGAACAGCTAGCATGATTTGAGCGCGCTTG
GAACTTAGTGTTTCAAGGACGTTTTGATGATACATATCATTAGTACCAACATTCAGACAG
TCTACTCCAAGACGAGGATTATGTTCGCATAATTGCCGTGCTTTCAGTTCAGAGACTGTA
ACAATTGGTGGCAAACCTGAATTCTCAGCTAAAGCCATTGGAATCGCCTCTAAAGCATCA
GCAAACGCTCGCATAGCATACGGCTCAAGACCTTCAATCTTGGCAGCTTTAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4713#0      AACAACAATAATTATAACAATTACAAAACAAACCTTCAATTTTGTAGGTTCCCGGAGAAA 60
consensus_4713#1      --------TTTTTTTTTTTTTTTTTTTACGT-TCGCCATTTATATTTGATCACA---AGC 48
                              *  ** *     **     **    *  ** ** * *  * ** *    *  

consensus_4713#0      AAACTCCCAAATACCAA-ACCAATGACAAAAGAAACCAAAATGTCCGAAAAGAATG---A 116
consensus_4713#1      AAACTTTTACACATTGATAGCAAAACCAAACCTAAAATAAATGTTTATAGTTCATCCACA 108
                      *****   * * *   * * ***   ****   **   ******    *    **    *

consensus_4713#0      TATAAACAAACAAGTCCAAAGGTTGAGTAAGACAAACACATCCAAAAACACAGTAAAATT 176
consensus_4713#1      GACACACGAATATCGTCAATCTTTAATATCATTTTACAAAGTTGAACAGCTAGCATGATT 168
                       * * ** ** *    ***   ** *         *** *    ** *   ** *  ***

consensus_4713#0      GATGTACAGTAAAAAGGTTTTAATCGGCCAAATGTCTTCAGTTGATCCGTAACACTCCCG 236
consensus_4713#1      TGAGCGCGCTTGGAA---CTTAGTGTTTCAAGGACGTTTTGATGATACATATCATTAGTA 225
                         *  *  *   **    *** *    ***     **  * **** * ** ** *    

consensus_4713#0      ACCATAAGAACCTTGATTCTTTTCACAGACAAGTAAATAGGTAGCAGGAAC-CCAAGTAT 295
consensus_4713#1      CCAACATTCAGAC--AGTCTACTCCAAGACGAGGATTATGTTCGCATAATTGCCGTGCTT 283
                       * * *   *     * ***  **  **** ** *    * * ***  *   **  *  *

consensus_4713#0      ATACATCACAAACAACCAANAACAAGCATTCAACACACCAACAACCTCGTGATCCCTAGG 355
consensus_4713#1      TCAGTTCAGAGACTGT-AACAATTGGTGGCAAACCTGAATTCTCAGCTAAAGCCATTGGA 342
                        *  *** * **    ** **   *     ***       *           *  * * 

consensus_4713#0      ACTTACACCAGTACGCCTAGGAATCCGAGTAGCTAGC-TACCACCTATAGCTTCAAGAAG 414
consensus_4713#1      ATCGCCTCTAAAGCATCAGCAAACGCTCGCA--TAGCATACGGCTCAAGACCTTCAATCT 400
                      *    * * *   *  *    **  *  * *  **** ***  *  *   * *  *    

consensus_4713#0      ACACAGTTTTCTAATATCTCTCACTAGGATCCCCTTTCTTGT 456
consensus_4713#1      TGGCAGCTTTAAG----------------------------- 413
                         *** ***