These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4719#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 565 fasta sequence [TGCTCGAAGTCTAATTTTTTTGCCTATAGGTACTAACGAAGTTTACGCTTAGTGTTGTTTATTGATCGTCGGTATTATCACCTGGATTATTTGACCTTTTGCGTTTTTCCACAATCAAATTTATAGGATCATTTAGTTTGGTTTTTACAACTCTTGAAGAAGTCTTTACGAAGCGCTTATAACATATCGTGCGCATTTGACGTTTCGATTAATATCAATAGGAGTTTCTCTTCGTTTTGATTGTTAGTTACAGTGACATGGCAGAAAACAAAAAATTAGATGATGACGTCACCGTTGTCATAGATAAACCAGATGATGTAAAACTGCAGCGATCTATCGGTATTGTAACCAGTATCACCATCATAGTANGATCAATGATTGGCTCAGGAATATTTGTCAGTCCTACTGGTATTTTGATGAATGTCGGAAGTATAGGAGCTAGTCTAATTATATGGGTTGCATGCGGGATCTTCAGTATGCTCGGAGCGTACTGTTATGCAGAACTTGGCACGATAATAGAGAGATCTGGAGGGGATTATATTTATGTATATGAAGCATTTGGACC] [+] EMBL CD201935 [TGCTCGAAGTCTAATTTTTTTGCCTATAGGTACTAACGAAGTTTACGCTTAGTGTTGTTTATTGATCGTCGGTATTATCACCTGGATTATTTGACCTTTTGCGTTTTTCCACAATCAAATTTATAGGATCATTTAGTTTGGTTTTTACAACTCTTGAAGAAGTCTTTACGAAGCGCTTATAACATATCGTGCGCATTTGACGTTTCGATTAATATCAATAGGAGTTTCTCTTCGTTTTGATTGTTAGTTACAGTGACATGGCAGAAAACAAAAAATTAGATGATGACGTCACCGTTGTCATAGATAAACCAGATGATGTAAAACTGCAGCGATCTATCGGTATTGTAACCAGTATCACCATCATAGTANGATCAATGATTGGCTCAGGAATATTTGTCAGTCCTACTGGTATTTTGATGAATGTCGGAAGTATAGGAGCTAGTCTAATTATATGGGTTGCATGCGGGATCTTCAGTATGCTCGGAGCGTACTGTTATGCAGAACTTGGCACGATAATAGAGAGATCTGGAGGGGATTATATTTATGTATAT ] [+] EMBL CD126273 [ CTGCAGCGATCTATCGGTATTGTAACCAGTATCACCATCATAGTAGGATCAATGATTGGCTCAGGAATATTTGTCAGTCCTACTGGTATTTTGATGAATGTCGGAAGTATAGGAGCTAGTCTAATTATATGGGTTGCATGCGGGATCTTCAGTATGCTCGGAGCGTACTGTTATGCAGAACTTGGCACGATAATAGAGAGATCTGGAGGGGATTATATTTATGTATATGAAGCATTTGGACC] consensusID : consensus_4719#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 301 fasta sequence [CCACGGACGCATCAATAAATTATGATGATGACGTCACCGTGTCATAGATAAACCAGATGATGTAAAACTGCAGCGATCTATCGGTATTGTAACCAGTATCACCATCATAGTAGGATCAATGATTGGCTCAGGAATATTTGTCAGTCCTACTGGTATTTTGATGAATGTCGGAAGTATAGGAGCTAGTCTAATTATATGGGTTGCATGCGGGATCTTCAGTATGCTCGGAGCGTACTGTTATGCAGAACTTGGCACGATAATAGAGAGATCTGGAGGGGATTATATTTATGTATATGAATGC] [+] EMBL CD126783 [CCACGGACGCATCAATAAATTATGATGATGACGTCACCGTGTCATAGATAAACCAGATGATGTAAAACTGCAGCGATCTATCGGTATTGTAACCAGTATCACCATCATAGTAGGATCAATGATTGGCTCAGGAATATTTGTCAGTCCTACTGGTATTTTGATGAATGTCGGAAGTATAGGAGCTAGTCTAATTATATGGGTTGCATGCGGGATCTTCAGTATGCTCGGAGCGTACTGTTATGCAGAACTTGGCACGATAATAGAGAGATCTGGAGGGGATTATATTTATGTATATGAATGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4719#0 TGCTCGAAGTCTAATTTTTTTGCCTATAGGTACTAACGAAGTTTACGCTTAGTGTTGTTT 60 consensus_4719#1 ------------------------------------------------------------ consensus_4719#0 ATTGATCGTCGGTATTATCACCTGGATTATTTGACCTTTTGCGTTTTTCCACAATCAAAT 120 consensus_4719#1 ------------------------------------------------------------ consensus_4719#0 TTATAGGATCATTTAGTTTGGTTTTTACAACTCTTGAAGAAGTCTTTACGAAGCGCTTAT 180 consensus_4719#1 ------------------------------------------------------------ consensus_4719#0 AACATATCGTGCGCATTTGACGTTTCGATTAATATCAATAGGAGTTTCTCTTCGTTTTGA 240 consensus_4719#1 ------------------------------------------------------------ consensus_4719#0 TTGTTAGTTACAGTGACATGGCAGAAAACAAAAAATTA-GATGATGACGTCACCGTTGTC 299 consensus_4719#1 ---------------CCACGG-ACGCATCAATAAATTATGATGATGACGTCACCGT-GTC 43 ** ** * * *** ****** ***************** *** consensus_4719#0 ATAGATAAACCAGATGATGTAAAACTGCAGCGATCTATCGGTATTGTAACCAGTATCACC 359 consensus_4719#1 ATAGATAAACCAGATGATGTAAAACTGCAGCGATCTATCGGTATTGTAACCAGTATCACC 103 ************************************************************ consensus_4719#0 ATCATAGTANGATCAATGATTGGCTCAGGAATATTTGTCAGTCCTACTGGTATTTTGATG 419 consensus_4719#1 ATCATAGTAGGATCAATGATTGGCTCAGGAATATTTGTCAGTCCTACTGGTATTTTGATG 163 ********* ************************************************** consensus_4719#0 AATGTCGGAAGTATAGGAGCTAGTCTAATTATATGGGTTGCATGCGGGATCTTCAGTATG 479 consensus_4719#1 AATGTCGGAAGTATAGGAGCTAGTCTAATTATATGGGTTGCATGCGGGATCTTCAGTATG 223 ************************************************************ consensus_4719#0 CTCGGAGCGTACTGTTATGCAGAACTTGGCACGATAATAGAGAGATCTGGAGGGGATTAT 539 consensus_4719#1 CTCGGAGCGTACTGTTATGCAGAACTTGGCACGATAATAGAGAGATCTGGAGGGGATTAT 283 ************************************************************ consensus_4719#0 ATTTATGTATATGAA-GCATTTGGACC 565 consensus_4719#1 ATTTATGTATATGAATGC--------- 301 *************** ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||